Factsheet for VIT_19s0014g01350.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0028g02160.t01	Wine grape	nucleus	58.64	77.25
KRH27347	Soybean	nucleus	64.09	76.63
VIT_10s0003g01280.t01	Wine grape	nucleus	58.18	73.14
KRH21973	Soybean	nucleus	63.64	72.16
Solyc07g062470.2.1	Tomato	nucleus	48.18	72.11
PGSC0003DMT400018295	Potato	nucleus	59.55	68.59
PGSC0003DMT400054899	Potato	nucleus	63.18	67.15
AT1G16910.1	Thale cress	cytosol	49.55	66.46
Solyc10g007310.1.1	Tomato	plastid	62.73	64.79
CDX88480	Canola	nucleus	52.73	62.7
Bra035066.1-P	Field mustard	nucleus	52.73	61.05
CDX87432	Canola	nucleus	52.73	61.05
CDY14588	Canola	nucleus	51.82	60.0
CDY26881	Canola	nucleus	51.82	59.69
Bra008382.1-P	Field mustard	nucleus	51.36	59.16
AT1G78815.1	Thale cress	nucleus	52.27	58.97
VIT_07s0005g03530.t01	Wine grape	nucleus	45.45	54.64
VIT_14s0036g00540.t01	Wine grape	plastid	45.45	52.36
Bra003637.1-P	Field mustard	nucleus	36.36	50.0
VIT_05s0049g01170.t01	Wine grape	nucleus	45.45	49.75
VIT_06s0004g07090.t01	Wine grape	nucleus	48.64	46.32
VIT_10s0003g05690.t01	Wine grape	plastid	48.18	42.74

Protein Annotations

EntrezGene:100257253	wikigene:100257253	MapMan:35.1	InterPro:ALOG_dom	EMBL:AM442512	ProteinID:CAN63025
ProteinID:CAN63025.1	ProteinID:CCB46251	ProteinID:CCB46251.1	UniProt:F6H2N3	EMBL:FN595229	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR006936	EntrezGene:LOC100257253	wikigene:LOC100257253	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF9	TIGR:TC64384	TMHMM:TMhelix	UniParc:UPI0001985870	ArrayExpress:VIT_19s0014g01350
EnsemblPlantsGene:VIT_19s0014g01350	EnsemblPlants:VIT_19s0014g01350.t01	unigene:Vvi.191	RefSeq:XP_002285447	RefSeq:XP_002285447.1	SEG:seg

Description

No Description!

Coordinates

chr19:-:1427173..1429631

Molecular Weight (calculated)

24571.1 Da

IEP (calculated)

10.033

GRAVY (calculated)

-0.705

Length

220 amino acids

Sequence
(BLAST)

001: MSPQQPHDVI SILFPTAILL SSSSFSSSPT IFFFILLGNS SDMSSNKGKD TGEGSSTRSS AEDQQQQPPP LSRYESQKRR DWNTFGQFLK NQRPPVALAQ
101: CNSNQVLDFL RYLDQFGKTK VHLQGCVYFG QPEPPGPCTC PLKQAWGSLD ALIGRLRAAY EENGGLPEKN PFASGAIRIY LREVRDSQAK ARGVPYKKKK
201: KKRNQMKANS DESNFPMQSM

Best Arabidopsis Sequence Match ( AT1G78815.1 )
(BLAST)

001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS

Arabidopsis Description

LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.