Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 38.31 | 81.91 |
| KRG92413 | Soybean | nucleus | 76.12 | 79.69 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 70.65 | 77.6 |
| KRH34391 | Soybean | nucleus | 75.62 | 75.25 |
| Zm00001d025863_P001 | Maize | nucleus | 60.2 | 72.02 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 65.67 | 69.11 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 66.17 | 66.5 |
| EES11114 | Sorghum | nucleus | 65.67 | 66.33 |
| Zm00001d003057_P001 | Maize | nucleus | 65.67 | 66.0 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 66.17 | 65.84 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 66.17 | 65.84 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 56.22 | 65.7 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 66.17 | 65.2 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 63.68 | 64.32 |
| Zm00001d017263_P001 | Maize | nucleus | 65.17 | 64.22 |
| Os04t0516200-01 | Rice | nucleus | 64.18 | 63.86 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 63.68 | 63.68 |
| Zm00001d051143_P001 | Maize | nucleus | 63.68 | 63.37 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 63.18 | 63.18 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 63.18 | 63.18 |
| Zm00001d014032_P001 | Maize | nucleus | 65.67 | 62.86 |
| Os10t0478000-01 | Rice | nucleus | 63.68 | 62.75 |
| KXG30661 | Sorghum | nucleus | 64.68 | 62.5 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 51.74 | 62.28 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 63.68 | 62.14 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 63.68 | 62.14 |
| Zm00001d032696_P001 | Maize | nucleus | 65.67 | 61.97 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 53.23 | 61.85 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 53.23 | 61.85 |
| Os02t0623400-00 | Rice | nucleus | 64.18 | 61.72 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 52.24 | 61.05 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 52.74 | 60.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.27 | 60.39 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 52.24 | 60.0 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 54.23 | 59.56 |
| KXG38327 | Sorghum | nucleus | 65.17 | 58.74 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 46.77 | 57.32 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 63.68 | 56.39 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 44.78 | 55.9 |
| Zm00001d051966_P001 | Maize | nucleus | 68.16 | 55.69 |
| Zm00001d018433_P001 | Maize | nucleus | 68.16 | 55.47 |
| EES05986 | Sorghum | nucleus | 68.16 | 54.58 |
| Os02t0811000-01 | Rice | nucleus | 67.16 | 54.44 |
| VIT_10s0003g05690.t01 | Wine grape | plastid | 66.17 | 53.63 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 67.16 | 53.57 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 67.16 | 53.57 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 67.16 | 53.57 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 63.68 | 53.11 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 66.17 | 51.95 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 58.71 | 51.08 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 49.75 | 45.45 |
Protein Annotations
| EntrezGene:104879291 | MapMan:35.1 | InterPro:ALOG_dom | ProteinID:CCB48590 | ProteinID:CCB48590.1 | UniProt:F6H8Q4 |
| EMBL:FN595496 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 |
| GO:GO:0009987 | InterPro:IPR006936 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF38 |
| UniParc:UPI00015C751F | ArrayExpress:VIT_05s0049g01170 | EnsemblPlantsGene:VIT_05s0049g01170 | EnsemblPlants:VIT_05s0049g01170.t01 | RefSeq:XP_010650097.1 | SEG:seg |
Description
No Description!
Coordinates
chr5:+:8239471..8240300
Molecular Weight (calculated)
22106.0 Da
IEP (calculated)
10.405
GRAVY (calculated)
-0.722
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVPEMDTS NADSTSININ INTMAVSTTT NNLNNSIAAA AAAASSSSSP SSSTPSRYEN QKRRDWNTFG QYLRNHRPPL SLSRCSGAHV LEFLRYLDQF
101: GKTKVHTQMC PFFGHPNPPA PCPCPLRQAW GSLDALIGRL RAAFEEHGGK PEANPFGARA VRLYLREVRD SQAKARGISY EKKKRKRPPQ QPPALPPPTT
201: S
101: GKTKVHTQMC PFFGHPNPPA PCPCPLRQAW GSLDALIGRL RAAFEEHGGK PEANPFGARA VRLYLREVRD SQAKARGISY EKKKRKRPPQ QPPALPPPTT
201: S
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.