Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P03870_001 | Banana | nucleus | 84.88 | 84.39 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 80.81 | 80.35 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 77.33 | 76.0 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 76.74 | 72.13 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.14 | 64.94 |
| GSMUA_Achr11P... | Banana | nucleus | 35.47 | 64.89 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 62.79 | 62.79 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 65.12 | 61.2 |
| Solyc09g025280.1.1 | Tomato | nucleus | 60.47 | 60.82 |
| Zm00001d025863_P001 | Maize | nucleus | 59.3 | 60.71 |
| Bra023738.1-P | Field mustard | plastid | 61.63 | 60.23 |
| KRG92413 | Soybean | nucleus | 64.53 | 57.81 |
| PGSC0003DMT400026698 | Potato | nucleus | 61.63 | 57.3 |
| KRH34151 | Soybean | plastid | 58.14 | 56.82 |
| KRH34391 | Soybean | nucleus | 66.28 | 56.44 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 65.7 | 56.22 |
| KRG95674 | Soybean | nucleus | 66.28 | 56.16 |
| KRH67397 | Soybean | nucleus | 66.28 | 56.16 |
| KRH32192 | Soybean | nucleus | 67.44 | 56.04 |
| CDY35523 | Canola | plastid | 63.37 | 55.9 |
| CDY69731 | Canola | plastid | 63.37 | 55.9 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 61.63 | 55.5 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 52.91 | 55.49 |
| AT3G23290.2 | Thale cress | plastid | 62.21 | 54.87 |
| Bra014935.1-P | Field mustard | plastid | 62.79 | 54.27 |
| CDX77531 | Canola | plastid | 62.79 | 54.27 |
| CDX85083 | Canola | plastid | 62.79 | 54.27 |
| CDY52479 | Canola | nucleus, plastid | 59.88 | 54.21 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 63.95 | 54.19 |
| KRH56293 | Soybean | nucleus | 66.28 | 54.03 |
| Os04t0516200-01 | Rice | nucleus | 63.37 | 53.96 |
| Os10t0478000-01 | Rice | nucleus | 63.95 | 53.92 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 64.53 | 53.88 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 64.53 | 53.88 |
| EES11114 | Sorghum | nucleus | 62.21 | 53.77 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 62.21 | 53.77 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 62.79 | 53.73 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 62.79 | 53.73 |
| CDY21126 | Canola | nucleus, plastid | 59.3 | 53.68 |
| CDY57024 | Canola | nucleus, plastid | 59.88 | 53.65 |
| Zm00001d003057_P001 | Maize | nucleus | 62.21 | 53.5 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 50.0 | 53.42 |
| CDY05593 | Canola | nucleus, plastid | 59.3 | 53.4 |
| CDY52505 | Canola | nucleus, plastid | 59.3 | 53.4 |
| Zm00001d014032_P001 | Maize | nucleus | 65.12 | 53.33 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 62.21 | 53.23 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 58.72 | 53.16 |
| CDY30000 | Canola | nucleus, plastid | 58.72 | 53.16 |
| KRG92633 | Soybean | nucleus | 58.72 | 53.16 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 59.3 | 53.12 |
| CDY64755 | Canola | nucleus, plastid | 59.3 | 53.12 |
| KRG97044 | Soybean | plastid | 56.4 | 53.01 |
| Solyc09g090180.1.1 | Tomato | plastid | 63.95 | 52.88 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 58.72 | 52.88 |
| CDX86199 | Canola | plastid | 58.72 | 52.6 |
| Zm00001d032696_P001 | Maize | nucleus | 65.12 | 52.58 |
| PGSC0003DMT400051692 | Potato | nucleus | 63.37 | 52.4 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 60.47 | 52.0 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 61.05 | 51.98 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 61.05 | 51.98 |
| Bra009997.1-P | Field mustard | plastid | 57.56 | 51.56 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 61.05 | 51.47 |
| Zm00001d017263_P001 | Maize | nucleus | 61.05 | 51.47 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 59.88 | 51.24 |
| Bra018263.1-P | Field mustard | nucleus | 63.95 | 51.16 |
| CDY10790 | Canola | nucleus | 63.95 | 51.16 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 56.4 | 51.05 |
| CDX74186 | Canola | nucleus, plastid | 56.4 | 51.05 |
| KXG30661 | Sorghum | nucleus | 61.63 | 50.96 |
| CDY24755 | Canola | nucleus, plastid | 63.37 | 50.7 |
| Bra021707.1-P | Field mustard | nucleus | 63.95 | 50.69 |
| CDY57087 | Canola | nucleus | 63.95 | 50.69 |
| CDY57088 | Canola | nucleus | 63.95 | 50.69 |
| AT2G31160.1 | Thale cress | nucleus | 64.53 | 50.68 |
| KXG38327 | Sorghum | nucleus | 65.7 | 50.67 |
| CDY63294 | Canola | nucleus | 54.07 | 50.54 |
| KRH68792 | Soybean | plastid | 54.07 | 50.54 |
| GSMUA_AchrUn_... | Banana | nucleus | 54.65 | 50.54 |
| Zm00001d051143_P001 | Maize | nucleus | 59.3 | 50.49 |
| Solyc06g083860.2.1 | Tomato | nucleus | 63.95 | 50.46 |
| CDY15426 | Canola | nucleus | 63.37 | 50.23 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 66.28 | 50.22 |
| CDY49331 | Canola | nucleus, plastid | 56.98 | 50.0 |
| GSMUA_Achr11P... | Banana | nucleus | 51.16 | 50.0 |
| CDY42932 | Canola | nucleus, plastid | 56.98 | 49.75 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 54.07 | 49.47 |
| Os02t0623400-00 | Rice | nucleus | 59.88 | 49.28 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 56.4 | 49.24 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 52.91 | 49.19 |
| PGSC0003DMT400029945 | Potato | nucleus | 51.74 | 48.63 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 50.58 | 48.33 |
| GSMUA_Achr11P... | Banana | nucleus | 55.23 | 47.74 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 57.56 | 47.37 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 53.49 | 46.7 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 55.23 | 46.57 |
| Zm00001d018433_P001 | Maize | nucleus | 66.86 | 46.56 |
| Os02t0811000-01 | Rice | nucleus | 66.86 | 46.37 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 64.53 | 46.06 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 67.44 | 46.03 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 67.44 | 46.03 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 67.44 | 46.03 |
| Solyc05g055020.2.1 | Tomato | nucleus | 56.4 | 45.97 |
| EES05986 | Sorghum | nucleus | 66.86 | 45.82 |
| GSMUA_AchrUn_... | Banana | nucleus | 55.23 | 45.67 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 57.56 | 45.62 |
| Zm00001d051966_P001 | Maize | nucleus | 65.12 | 45.53 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 66.86 | 44.92 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 54.65 | 44.34 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 52.33 | 44.34 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 52.91 | 43.96 |
| GSMUA_Achr11P... | Banana | nucleus | 55.81 | 43.24 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 51.74 | 43.2 |
| GSMUA_Achr10P... | Banana | nucleus | 50.58 | 42.65 |
| GSMUA_Achr11P... | Banana | nucleus | 49.42 | 41.87 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 54.07 | 34.7 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 59.3 | 34.34 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 49.42 | 29.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P18640_001 | EnsemblPlants:GSMUA_Achr5T18640_001 | EnsemblPlantsGene:GSMUA_Achr5G18640_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF36 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI00029682AD | UniProt:M0SZP3 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative uncharacterized protein Sb06g022610 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18640_001]
Coordinates
chr5:+:20117146..20117733
Molecular Weight (calculated)
18958.0 Da
IEP (calculated)
10.603
GRAVY (calculated)
-0.984
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFVPNPDSP HSDNSGGLNS SPQQVASSST ATSTGAPSSS SSSSSPSLSR YESQKRRDWN TFGQYLKNHR PPLSLARCSG AHVLEFLRYL DQFGKTKVHT
101: QILDALIGRL RAAYEENGGK PESNPFGARA VRLYLREVRE TQSKARGVSY EKKKRKKPQQ HQQHPPPPPA AA
101: QILDALIGRL RAAYEENGGK PESNPFGARA VRLYLREVRE TQSKARGVSY EKKKRKKPQQ HQQHPPPPPA AA
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.