Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P00260_001 | Banana | nucleus | 79.81 | 81.37 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 69.23 | 77.84 |
| GSMUA_Achr11P... | Banana | nucleus | 78.85 | 73.87 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 59.13 | 65.43 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 48.56 | 58.72 |
| Os02t0166800-01 | Rice | nucleus | 53.37 | 58.12 |
| GSMUA_Achr11P... | Banana | nucleus | 49.04 | 57.95 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 44.23 | 56.1 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 46.63 | 56.07 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.0 | 55.91 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.35 | 55.84 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 45.67 | 55.23 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 45.19 | 54.34 |
| GSMUA_Achr11P... | Banana | nucleus | 24.52 | 54.26 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 44.23 | 52.57 |
| GSMUA_Achr11P... | Banana | nucleus | 49.04 | 51.26 |
| PGSC0003DMT400054474 | Potato | plastid | 42.79 | 50.86 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 44.71 | 50.82 |
| Solyc02g069510.1.1 | Tomato | nucleus | 43.75 | 50.28 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 50.0 | 50.24 |
| Zm00001d015342_P001 | Maize | nucleus | 58.17 | 48.99 |
| GSMUA_Achr11P... | Banana | nucleus | 46.15 | 47.29 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 36.54 | 47.2 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 44.23 | 46.7 |
| EES04579 | Sorghum | nucleus | 57.69 | 46.51 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 57.69 | 46.33 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 59.62 | 46.27 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 59.62 | 46.27 |
| TraesCS6B01G168300.1 | Wheat | nucleus, plastid | 57.69 | 46.15 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 59.62 | 46.1 |
| TraesCS6D01G129400.1 | Wheat | nucleus | 57.21 | 45.95 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 59.13 | 45.9 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 46.63 | 45.75 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 43.75 | 44.83 |
| Os06t0672400-01 | Rice | nucleus | 59.13 | 44.4 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 46.15 | 44.24 |
| GSMUA_Achr10P... | Banana | nucleus | 43.27 | 44.12 |
| KRH58368 | Soybean | nucleus | 50.0 | 44.07 |
| Zm00001d046998_P001 | Maize | nucleus | 58.17 | 43.68 |
| Zm00001d036617_P001 | Maize | nucleus | 57.21 | 42.96 |
| KXG34092 | Sorghum | nucleus | 58.17 | 42.91 |
| OQU76862 | Sorghum | nucleus | 58.17 | 42.91 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 42.31 | 42.72 |
| KRH42251 | Soybean | plastid | 49.52 | 41.7 |
| Zm00001d018775_P001 | Maize | nucleus | 48.08 | 39.06 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 48.08 | 38.46 |
| TraesCS2D01G255200.1 | Wheat | nucleus | 47.6 | 38.08 |
| TraesCS2B01G267400.1 | Wheat | nucleus | 46.15 | 37.35 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 46.63 | 37.31 |
| Os07t0139300-01 | Rice | nucleus | 49.04 | 36.96 |
| EER97956 | Sorghum | mitochondrion, nucleus | 49.04 | 35.92 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 45.67 | 35.45 |
| Os08t0248000-00 | Rice | nucleus | 30.29 | 31.19 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 42.31 | 30.99 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP28050_001 | EnsemblPlants:GSMUA_AchrUn_randomT28050_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG28050_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF5 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000294A8E5 | UniProt:M0UD13 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28050_001]
Coordinates
chrchrUn_random:-:136722970..136723845
Molecular Weight (calculated)
22745.9 Da
IEP (calculated)
9.546
GRAVY (calculated)
-0.592
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSANSDSSG NSGALDGGGR PSRYESQKRR DWNSFRQYLR NHRPPLELAR CSGAHVLEFL RYLDQFGKTK AWGSLDALVG RLRAAFEEDG GQPEANPFAA
101: RAVRLYLREV RDSQAKARGI AYEKKKRKRP FPPLQGYNPQ PPVPMAAAVP VIGYDQPESD LNLVSGGYQH HLHGHLMLPT VDASGDEAAA MAVAEAHSGG
201: MIPLSVLN
101: RAVRLYLREV RDSQAKARGI AYEKKKRKRP FPPLQGYNPQ PPVPMAAAVP VIGYDQPESD LNLVSGGYQH HLHGHLMLPT VDASGDEAAA MAVAEAHSGG
201: MIPLSVLN
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.