CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015342_P001	Maize	nucleus	86.82	90.69
TraesCS6D01G129400.1	Wheat	nucleus	70.93	70.66
TraesCS6A01G139700.1	Wheat	nucleus	70.54	70.27
TraesCS6B01G168300.1	Wheat	nucleus, plastid	70.54	70.0
OQU76862	Sorghum	nucleus	70.93	64.89
KXG34092	Sorghum	nucleus	70.93	64.89
PGSC0003DMT400054474	Potato	plastid	42.64	62.86
Solyc02g069510.1.1	Tomato	nucleus	43.02	61.33
EES11114	Sorghum	nucleus	47.29	61.31
KXG30661	Sorghum	nucleus	47.67	59.13
GSMUA_Achr4P31900_001	Banana	nucleus	42.64	58.51
GSMUA_Achr9P30540_001	Banana	nucleus	41.86	58.38
GSMUA_AchrUn_...	Banana	nucleus	46.51	57.69
KXG38327	Sorghum	nucleus	49.22	56.95
OQU83235	Sorghum	cytosol	38.76	56.82
GSMUA_Achr5P00260_001	Banana	nucleus	44.57	56.37
OQU87784	Sorghum	nucleus	45.35	54.42
GSMUA_Achr11P...	Banana	nucleus	45.74	53.15
KRH58368	Soybean	nucleus	45.74	50.0
EES05986	Sorghum	nucleus	48.45	49.8
KRH42251	Soybean	plastid	46.9	48.99
EES18364	Sorghum	nucleus	45.74	45.91
EER97956	Sorghum	mitochondrion, nucleus	43.8	39.79
EES19345	Sorghum	nucleus, plastid	46.12	36.62

Protein Annotations

MapMan:35.1	EntrezGene:8076105	InterPro:ALOG_dom	UniProt:C5XVI3	EnsemblPlants:EES04579	ProteinID:EES04579
ProteinID:EES04579.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628
GO:GO:0009987	InterPro:IPR006936	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF39
EnsemblPlantsGene:SORBI_3004G052800	UniParc:UPI0001A855CE	RefSeq:XP_002451603.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:4286176..4289487

Molecular Weight (calculated)

27836.0 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.521

Length

258 amino acids

Sequence
(BLAST)

001: MEFAGGGIAA PAADSPGAGA SRPSRYESQK RRDWHTFGQY LRNHRPPLEL PRCSGAHVLE FLRYLDQFGK TKVHASGCPF FGHPSPPAPC PCPLKQAWGS
101: LDALVGRLRA AFEEHGGRPE ANPFGARAVR LYLREVRDSQ AKARGIAYEK KRRKRHPAAH RQPKQQQDGH GQHHHPSQAA PGPVAERRLA DVAEPPAPHF
201: LIPHAHFLHG HFLAPVTQPI DPAAGGGGGG AGEDIVLAMA AAAEAHAAGF FMPLSVFH

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.