Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 77.84 | 69.23 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 75.14 | 68.14 |
| GSMUA_Achr11P... | Banana | nucleus | 76.22 | 63.51 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 55.14 | 59.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.03 | 56.49 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 57.3 | 56.38 |
| GSMUA_Achr11P... | Banana | nucleus | 28.11 | 55.32 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 50.27 | 53.76 |
| GSMUA_Achr11P... | Banana | nucleus | 50.81 | 53.41 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 49.73 | 53.18 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 49.19 | 52.91 |
| Os02t0166800-01 | Rice | nucleus | 53.51 | 51.83 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 48.65 | 51.43 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 45.41 | 51.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 51.35 | 51.08 |
| PGSC0003DMT400054474 | Potato | plastid | 47.03 | 49.71 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 48.11 | 48.63 |
| GSMUA_Achr11P... | Banana | nucleus | 51.89 | 48.24 |
| Solyc02g069510.1.1 | Tomato | nucleus | 47.03 | 48.07 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 51.35 | 45.89 |
| GSMUA_Achr11P... | Banana | nucleus | 49.73 | 45.32 |
| Zm00001d015342_P001 | Maize | nucleus | 58.38 | 43.72 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 37.84 | 43.48 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 49.73 | 43.4 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 45.41 | 42.64 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 49.19 | 41.94 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 45.95 | 41.87 |
| EES04579 | Sorghum | nucleus | 58.38 | 41.86 |
| TraesCS7A01G466000.1 | Wheat | nucleus | 60.54 | 41.79 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 60.54 | 41.64 |
| KRH58368 | Soybean | nucleus | 52.97 | 41.53 |
| Os06t0672400-01 | Rice | nucleus | 62.16 | 41.52 |
| TraesCS7B01G367400.1 | Wheat | nucleus | 60.0 | 41.42 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 60.0 | 41.42 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 45.95 | 41.26 |
| TraesCS6A01G139700.1 | Wheat | nucleus | 57.3 | 40.93 |
| TraesCS6B01G168300.1 | Wheat | nucleus, plastid | 57.3 | 40.77 |
| GSMUA_Achr10P... | Banana | nucleus | 44.86 | 40.69 |
| TraesCS6D01G129400.1 | Wheat | nucleus | 56.76 | 40.54 |
| KRH42251 | Soybean | plastid | 52.97 | 39.68 |
| Zm00001d036617_P001 | Maize | nucleus | 58.92 | 39.35 |
| Zm00001d046998_P001 | Maize | nucleus | 58.92 | 39.35 |
| OQU76862 | Sorghum | nucleus | 58.92 | 38.65 |
| KXG34092 | Sorghum | nucleus | 58.92 | 38.65 |
| Zm00001d018775_P001 | Maize | nucleus | 50.81 | 36.72 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 50.27 | 35.77 |
| TraesCS2D01G255200.1 | Wheat | nucleus | 49.19 | 35.0 |
| Os07t0139300-01 | Rice | nucleus | 51.89 | 34.78 |
| TraesCS2B01G267400.1 | Wheat | nucleus | 47.57 | 34.24 |
| TraesCS2A01G254700.1 | Wheat | nucleus | 48.11 | 34.23 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 47.57 | 32.84 |
| EER97956 | Sorghum | mitochondrion, nucleus | 50.27 | 32.75 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 48.65 | 31.69 |
| Os08t0248000-00 | Rice | nucleus | 34.05 | 31.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P30540_001 | EnsemblPlants:GSMUA_Achr9T30540_001 | EnsemblPlantsGene:GSMUA_Achr9G30540_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF5 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000295EE89 | UniProt:M0U4W1 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr9G30540_001]
Coordinates
chr9:+:33773500..33774141
Molecular Weight (calculated)
20416.0 Da
IEP (calculated)
10.737
GRAVY (calculated)
-0.728
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSATSDSSG NSAAPDGGGR PSRYESQKRR DWNSFGQYLR NHRPPLELSR CSGAHVLEFL RYLDQQAWGS LDSLVGRLRA AFEEDGGQPE VNPFAARAVR
101: LYLREVRDSQ AKARGIAYEK KKRKRPPPSQ QGFSPQAPVP AAATAAPLIG HGRSAADFIA SSAYPHRLHG HLMLPPWIPA ETMRR
101: LYLREVRDSQ AKARGIAYEK KKRKRPPPSQ QGFSPQAPVP AAATAAPLIG HGRSAADFIA SSAYPHRLHG HLMLPPWIPA ETMRR
001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN
Arabidopsis Description
LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.