Factsheet for GSMUA_Achr1P09270_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	nucleus	75.0	83.77
GSMUA_Achr11P...	Banana	nucleus	34.88	63.83
GSMUA_Achr5P03870_001	Banana	nucleus	63.95	63.58
GSMUA_Achr5P18640_001	Banana	nucleus	62.79	62.79
GSMUA_Achr5P14570_001	Banana	nucleus	62.79	62.43
GSMUA_Achr4P28760_001	Banana	nucleus	64.53	60.66
GSMUA_Achr4P21940_001	Banana	nucleus	61.63	60.57
VIT_07s0005g03530.t01	Wine grape	nucleus	63.95	60.11
GSMUA_Achr1P05650_001	Banana	nucleus	56.4	59.15
Bra023738.1-P	Field mustard	plastid	59.88	58.52
Solyc09g025280.1.1	Tomato	nucleus	57.56	57.89
KRG92413	Soybean	nucleus	62.79	56.25
PGSC0003DMT400026698	Potato	nucleus	59.88	55.68
GSMUA_Achr6P36540_001	Banana	nucleus	51.74	55.28
KRH67397	Soybean	nucleus	65.12	55.17
KRG95674	Soybean	nucleus	65.12	55.17
GSMUA_Achr9P30540_001	Banana	nucleus	59.3	55.14
KRH32192	Soybean	nucleus	66.28	55.07
KRH34391	Soybean	nucleus	63.95	54.46
AT3G23290.2	Thale cress	plastid	61.63	54.36
CDY69731	Canola	plastid	61.63	54.36
CDY35523	Canola	plastid	61.63	54.36
KRH56293	Soybean	nucleus	65.7	53.55
Bra014935.1-P	Field mustard	plastid	61.63	53.27
CDX77531	Canola	plastid	61.63	53.27
CDX85083	Canola	plastid	61.63	53.27
KRH34151	Soybean	plastid	53.49	52.27
VIT_05s0049g01170.t01	Wine grape	nucleus	61.05	52.24
PGSC0003DMT400051692	Potato	nucleus	62.79	51.92
GSMUA_Achr4P31900_001	Banana	nucleus	56.4	51.6
GSMUA_Achr5P00260_001	Banana	nucleus	61.05	51.47
AT5G28490.1	Thale cress	nucleus, plastid	56.4	51.05
GSMUA_Achr11P...	Banana	nucleus	51.74	50.57
CDY52479	Canola	nucleus, plastid	55.81	50.53
VIT_14s0036g00540.t01	Wine grape	plastid	55.81	50.26
PGSC0003DMT400044213	Potato	mitochondrion	59.3	50.25
CDX86199	Canola	plastid	55.81	50.0
KRG92633	Soybean	nucleus	55.23	50.0
CDY15426	Canola	nucleus	62.79	49.77
CDY05593	Canola	nucleus, plastid	55.23	49.74
CDY52505	Canola	nucleus, plastid	55.23	49.74
Solyc06g083860.2.1	Tomato	nucleus	62.79	49.54
Solyc09g090180.1.1	Tomato	plastid	59.88	49.52
CDY57088	Canola	nucleus	62.21	49.31
CDY57087	Canola	nucleus	62.21	49.31
Bra020610.1-P	Field mustard	nucleus, plastid	54.65	49.21
CDY64755	Canola	nucleus, plastid	54.65	48.96
CDY57024	Canola	nucleus, plastid	54.65	48.96
Bra009997.1-P	Field mustard	plastid	54.65	48.96
GSMUA_AchrUn_...	Banana	nucleus	52.91	48.92
Bra021707.1-P	Field mustard	nucleus	61.63	48.85
CDY24755	Canola	nucleus, plastid	61.05	48.84
Bra018263.1-P	Field mustard	nucleus	61.05	48.84
CDY10790	Canola	nucleus	61.05	48.84
GSMUA_Achr11P...	Banana	nucleus	56.4	48.74
GSMUA_AchrUn_...	Banana	nucleus	58.72	48.56
Bra036134.1-P	Field mustard	nucleus, plastid	54.07	48.44
AT2G31160.1	Thale cress	nucleus	61.05	47.95
CDX74186	Canola	nucleus, plastid	52.91	47.89
Bra001109.1-P	Field mustard	nucleus, plastid	52.91	47.89
KRG97044	Soybean	plastid	50.58	47.54
GSMUA_Achr11P...	Banana	nucleus	60.47	46.85
CDY21126	Canola	nucleus, plastid	51.74	46.84
CDY63294	Canola	nucleus	50.0	46.74
PGSC0003DMT400029945	Potato	nucleus	49.42	46.45
CDY30000	Canola	nucleus, plastid	51.16	46.32
Bra040188.1-P	Field mustard	nucleus, plastid	52.91	46.19
Solyc04g009980.2.1	Tomato	nucleus, plastid	48.26	46.11
CDY49331	Canola	nucleus, plastid	52.33	45.92
CDY42932	Canola	nucleus, plastid	52.33	45.69
KRH68792	Soybean	plastid	48.84	45.65
AT3G04510.1	Thale cress	nucleus, plastid	52.91	45.27
GSMUA_Achr3P10070_001	Banana	nucleus	55.81	44.24
GSMUA_Achr5P07420_001	Banana	nucleus	54.07	43.87
GSMUA_Achr6P08720_001	Banana	nucleus	50.0	43.65
GSMUA_Achr8P01890_001	Banana	nucleus	51.16	43.35
GSMUA_Achr10P...	Banana	nucleus	51.16	43.14
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	51.74	43.0
PGSC0003DMT400060169	Potato	nucleus, plastid	51.16	42.11
Solyc05g055020.2.1	Tomato	nucleus	51.16	41.71
GSMUA_Achr11P...	Banana	nucleus	47.09	39.9
GSMUA_Achr7P18300_001	Banana	nucleus	47.67	39.81
GSMUA_Achr5P29450_001	Banana	cytosol, nucleus, plastid	55.23	35.45
GSMUA_Achr9P18050_001	Banana	nucleus	52.33	31.69
Bra040137.1-P	Field mustard	nucleus, plastid	51.74	29.97

Protein Annotations

EnsemblPlants:GSMUA_Achr1P09270_001	EnsemblPlants:GSMUA_Achr1T09270_001	EnsemblPlantsGene:GSMUA_Achr1G09270_001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF36	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002950540	UniProt:M0RYD6
MapMan:35.1	:	:	:	:	:

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G09270_001]

Coordinates

chr1:-:7112513..7113115

Molecular Weight (calculated)

18853.4 Da

IEP (calculated)

11.125

GRAVY (calculated)

-0.821

Length

172 amino acids

Sequence
(BLAST)

001: MAMVPKPGSP RSDGFLTSPS SSPAAAVTSP AASAASPSLS RYESQKRRDW NTFGQYLKNH RPPLSLSRCS GAHVLEFLRY LDQFAWGSLD ALIGRLRAAF
101: EENGGKPEAN PFGARAVRLY LREIREMQSK ARGISYEKKK RKKQPPPPQP QPQPQPRPPH PHSPSPATGA AT

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.