Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28490.1 | CDX84366 | AT5G62920.1 | 18642946 |
| AT5G28490.1 | CDY00336 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52505 | Canola | nucleus, plastid | 98.95 | 98.95 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 94.76 | 95.26 |
| CDY52479 | Canola | nucleus, plastid | 91.1 | 91.58 |
| CDY64755 | Canola | nucleus, plastid | 91.62 | 91.15 |
| CDY57024 | Canola | nucleus, plastid | 91.1 | 90.62 |
| CDX86199 | Canola | plastid | 90.05 | 89.58 |
| CDY42932 | Canola | nucleus, plastid | 81.68 | 79.19 |
| CDY49331 | Canola | nucleus, plastid | 81.15 | 79.08 |
| CDX74186 | Canola | nucleus, plastid | 75.92 | 76.32 |
| CDY21126 | Canola | nucleus, plastid | 75.92 | 76.32 |
| CDY30000 | Canola | nucleus, plastid | 74.87 | 75.26 |
| GSMUA_Achr11P... | Banana | nucleus | 36.65 | 74.47 |
| CDY63294 | Canola | nucleus | 71.73 | 74.46 |
| KRH34151 | Soybean | plastid | 63.87 | 69.32 |
| Zm00001d025863_P001 | Maize | nucleus | 59.16 | 67.26 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 65.97 | 65.97 |
| KRG97044 | Soybean | plastid | 62.83 | 65.57 |
| KRG92633 | Soybean | nucleus | 63.87 | 64.21 |
| KRH68792 | Soybean | plastid | 60.73 | 63.04 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 68.06 | 62.2 |
| CDY35523 | Canola | plastid | 63.35 | 62.05 |
| CDY69731 | Canola | plastid | 63.35 | 62.05 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 58.12 | 61.67 |
| Solyc05g055020.2.1 | Tomato | nucleus | 68.06 | 61.61 |
| CDX77531 | Canola | plastid | 63.35 | 60.8 |
| CDX85083 | Canola | plastid | 63.35 | 60.8 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 52.36 | 60.61 |
| PGSC0003DMT400029945 | Potato | nucleus | 57.59 | 60.11 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.4 | 59.3 |
| CDY02038 | Canola | cytosol | 50.26 | 58.54 |
| EES11114 | Sorghum | nucleus | 60.73 | 58.29 |
| Zm00001d003057_P001 | Maize | nucleus | 60.73 | 58.0 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 60.21 | 57.79 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 60.21 | 57.21 |
| CDY10790 | Canola | nucleus | 64.4 | 57.21 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 59.69 | 57.0 |
| Os10t0478000-01 | Rice | nucleus | 60.73 | 56.86 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 59.69 | 56.72 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 59.69 | 56.72 |
| CDY57087 | Canola | nucleus | 64.4 | 56.68 |
| CDY57088 | Canola | nucleus | 64.4 | 56.68 |
| CDY32697 | Canola | nucleus | 52.36 | 56.5 |
| Os04t0516200-01 | Rice | nucleus | 59.69 | 56.44 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 59.69 | 56.44 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 59.69 | 56.44 |
| CDY24755 | Canola | nucleus, plastid | 63.35 | 56.28 |
| CDY15426 | Canola | nucleus | 63.87 | 56.22 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 50.79 | 56.07 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 50.79 | 56.07 |
| Zm00001d051143_P001 | Maize | nucleus | 59.16 | 55.94 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 59.69 | 55.88 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 60.21 | 55.83 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 60.21 | 55.83 |
| Zm00001d014032_P001 | Maize | nucleus | 61.26 | 55.71 |
| Zm00001d017263_P001 | Maize | nucleus | 59.16 | 55.39 |
| KXG30661 | Sorghum | nucleus | 60.21 | 55.29 |
| CDY59510 | Canola | nucleus | 52.36 | 55.25 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 49.74 | 55.23 |
| Zm00001d032696_P001 | Maize | nucleus | 61.26 | 54.93 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 50.26 | 54.86 |
| CDY47983 | Canola | nucleus | 50.26 | 54.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.98 | 54.55 |
| Os02t0623400-00 | Rice | nucleus | 59.69 | 54.55 |
| CDY55387 | Canola | nucleus | 50.79 | 54.49 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 46.6 | 54.27 |
| CDY14848 | Canola | nucleus | 50.26 | 54.24 |
| CDX77619 | Canola | cytosol | 27.23 | 53.06 |
| CDY06675 | Canola | nucleus, plastid | 54.45 | 52.53 |
| CDY10247 | Canola | nucleus, plastid | 54.45 | 52.53 |
| KXG38327 | Sorghum | nucleus | 61.26 | 52.47 |
| CDY32977 | Canola | nucleus, plastid | 50.26 | 52.46 |
| CDY61050 | Canola | nucleus | 50.26 | 52.46 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 50.26 | 52.46 |
| CDY59064 | Canola | nucleus | 53.93 | 52.02 |
| CDX94980 | Canola | nucleus | 53.4 | 51.52 |
| CDY09940 | Canola | nucleus | 53.4 | 51.52 |
| CDY20312 | Canola | nucleus | 53.4 | 51.52 |
| CDY52287 | Canola | nucleus | 53.4 | 51.52 |
| CDX88480 | Canola | nucleus | 49.21 | 50.81 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 60.21 | 50.66 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 42.41 | 50.31 |
| CDY06030 | Canola | nucleus | 47.12 | 49.72 |
| CDX87432 | Canola | nucleus | 49.21 | 49.47 |
| CDX87760 | Canola | nucleus | 46.07 | 48.89 |
| CDY14588 | Canola | nucleus | 48.17 | 48.42 |
| CDY26881 | Canola | nucleus | 48.17 | 48.17 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 47.12 | 48.13 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 60.21 | 47.72 |
| CDX76510 | Canola | nucleus | 48.17 | 47.67 |
| CDY67351 | Canola | nucleus | 48.17 | 47.67 |
| CDY01557 | Canola | nucleus | 47.64 | 47.64 |
| Zm00001d051966_P001 | Maize | nucleus | 61.26 | 47.56 |
| CDY34056 | Canola | nucleus | 47.64 | 47.15 |
| Zm00001d018433_P001 | Maize | nucleus | 60.73 | 46.96 |
| CDX78877 | Canola | nucleus | 48.17 | 46.94 |
| EES05986 | Sorghum | nucleus | 61.26 | 46.61 |
| Os02t0811000-01 | Rice | nucleus | 60.21 | 46.37 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 60.73 | 46.03 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 60.73 | 46.03 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 60.73 | 46.03 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 59.69 | 44.53 |
Protein Annotations
| EnsemblPlants:CDY05593 | EnsemblPlantsGene:GSBRNA2T00120551001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY05593 | ProteinID:CDY05593.1 | SEG:seg | UniParc:UPI0004EAE407 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC02g39440D
Coordinates
chrLK031963:-:44835..45410
Molecular Weight (calculated)
21811.9 Da
IEP (calculated)
10.449
GRAVY (calculated)
-0.898
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MELISQQANK NPNTLTQSTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ SKARGVSYEK KRKRVNRLKM QTQPPLQLQQ QQEQQPQQGQ SMMANYSGAT V
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ SKARGVSYEK KRKRVNRLKM QTQPPLQLQQ QQEQQPQQGQ SMMANYSGAT V
001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
Arabidopsis Description
LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.