Factsheet for Solyc05g055020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
plasma membrane 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113720.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28490.1	Solyc03g113720.2.1	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060169	Potato	nucleus, plastid	91.47	92.34
GSMUA_Achr11P...	Banana	nucleus	31.75	71.28
AT5G28490.1	Thale cress	nucleus, plastid	61.61	68.42
CDY52505	Canola	nucleus, plastid	61.61	68.06
CDY05593	Canola	nucleus, plastid	61.61	68.06
Solyc09g025280.1.1	Tomato	nucleus	54.98	67.84
Bra020610.1-P	Field mustard	nucleus, plastid	61.14	67.54
CDY52479	Canola	nucleus, plastid	60.19	66.84
CDY64755	Canola	nucleus, plastid	60.19	66.15
CDY57024	Canola	nucleus, plastid	60.19	66.15
CDY49331	Canola	nucleus, plastid	61.14	65.82
Bra036134.1-P	Field mustard	nucleus, plastid	59.72	65.62
Solyc04g009980.2.1	Tomato	nucleus, plastid	55.92	65.56
CDY42932	Canola	nucleus, plastid	60.66	64.97
Bra040188.1-P	Field mustard	nucleus, plastid	60.66	64.97
KRH34151	Soybean	plastid	54.03	64.77
CDY30000	Canola	nucleus, plastid	58.29	64.74
CDY21126	Canola	nucleus, plastid	58.29	64.74
CDY63294	Canola	nucleus	56.4	64.67
KRG97044	Soybean	plastid	55.92	64.48
CDX74186	Canola	nucleus, plastid	57.82	64.21
Bra001109.1-P	Field mustard	nucleus, plastid	57.82	64.21
CDX86199	Canola	plastid	58.29	64.06
AT3G04510.1	Thale cress	nucleus, plastid	60.19	63.18
Bra009997.1-P	Field mustard	plastid	57.35	63.02
VIT_14s0036g00540.t01	Wine grape	plastid	56.87	62.83
Zm00001d025863_P001	Maize	nucleus	49.76	62.5
KRH68792	Soybean	plastid	54.5	62.5
KRG92633	Soybean	nucleus	54.98	61.05
Solyc07g062470.2.1	Tomato	nucleus	40.28	57.82
Solyc02g069510.1.1	Tomato	nucleus	48.82	56.91
EES11114	Sorghum	nucleus	53.55	56.78
HORVU2Hr1G089190.1	Barley	nucleus	53.55	56.78
Zm00001d003057_P001	Maize	nucleus	53.55	56.5
GSMUA_Achr5P18640_001	Banana	nucleus	45.97	56.4
Solyc09g090180.1.1	Tomato	plastid	55.45	56.25
TraesCS2D01G378900.1	Wheat	nucleus	53.55	56.22
TraesCS2A01G382500.1	Wheat	nucleus	53.55	56.22
TraesCS2B01G399800.1	Wheat	nucleus	53.08	55.72
GSMUA_Achr5P03870_001	Banana	nucleus	45.5	55.49
TraesCS6A01G225000.1	Wheat	nucleus	53.08	55.45
TraesCS6B01G256500.1	Wheat	nucleus	52.13	55.0
TraesCS6D01G209700.1	Wheat	nucleus	52.61	54.95
Os04t0516200-01	Rice	nucleus	52.61	54.95
GSMUA_Achr5P14570_001	Banana	nucleus	45.02	54.91
Zm00001d051143_P001	Maize	nucleus	52.13	54.46
HORVU6Hr1G058340.2	Barley	nucleus	52.61	54.41
GSMUA_Achr4P21940_001	Banana	nucleus	45.02	54.29
Zm00001d017263_P001	Maize	nucleus	51.66	53.43
Os10t0478000-01	Rice	nucleus	51.18	52.94
TraesCS1B01G172100.1	Wheat	nucleus	51.66	52.91
TraesCS1D01G153700.1	Wheat	nucleus	51.66	52.91
KXG30661	Sorghum	nucleus	52.13	52.88
Zm00001d014032_P001	Maize	nucleus	52.61	52.86
Solyc10g008000.1.1	Tomato	nucleus	44.08	52.25
Os02t0623400-00	Rice	nucleus	51.66	52.15
Zm00001d032696_P001	Maize	nucleus	52.61	52.11
Solyc06g083860.2.1	Tomato	nucleus	53.55	51.83
GSMUA_Achr1P09270_001	Banana	nucleus	41.71	51.16
GSMUA_Achr4P28760_001	Banana	nucleus	44.08	50.82
Solyc02g076820.2.1	Tomato	plastid	45.97	50.52
KXG38327	Sorghum	nucleus	53.08	50.22
GSMUA_Achr1P05650_001	Banana	nucleus	38.39	49.39
Solyc12g014260.1.1	Tomato	nucleus	47.87	49.27
HORVU1Hr1G041240.5	Barley	nucleus	52.13	48.46
Solyc06g082210.1.1	Tomato	nucleus	50.71	48.2
GSMUA_AchrUn_...	Banana	nucleus	35.07	48.05
Solyc10g007310.1.1	Tomato	plastid	47.39	46.95
Zm00001d051966_P001	Maize	nucleus	54.03	46.34
Os02t0811000-01	Rice	nucleus	54.03	45.97
Zm00001d018433_P001	Maize	nucleus	53.55	45.75
TraesCS6A01G377300.1	Wheat	nucleus	54.5	45.63
TraesCS6B01G414700.1	Wheat	nucleus	54.5	45.63
TraesCS6D01G361900.1	Wheat	nucleus	54.5	45.63
EES05986	Sorghum	nucleus	54.03	45.42
TraesCS1A01G154900.1	Wheat	nucleus	51.66	45.23
HORVU6Hr1G088790.1	Barley	nucleus	54.5	44.92
GSMUA_Achr6P36540_001	Banana	nucleus	34.12	44.72
Bra040137.1-P	Field mustard	nucleus, plastid	58.77	41.75

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936	UniProt:K4C2H9	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF16	EnsemblPlantsGene:Solyc05g055020.2	EnsemblPlants:Solyc05g055020.2.1	UniParc:UPI0002766EA0	SEG:seg

Description

No Description!

Coordinates

chr5:-:64796236..64798491

Molecular Weight (calculated)

23444.7 Da

IEP (calculated)

9.529

GRAVY (calculated)

-0.638

Length

211 amino acids

Sequence
(BLAST)

001: MDFVTAQGNN FTTSGNNMVQ GTNFIANSTT MIESSVPPLS RYENQKRRDW NTFCQYVRNH QPPLSLPQCT SAHILEFLRY LDQFGKTKVH NQNCPFFGLL
101: NPPAPCPCPL RQAWGSLDAL IGRLRAAYEE NGGKPEMNPF GSRNVRLFLR EVRDFQSKSR GVSYEKKRKR TTSSTNNNKS KIITVIDGGG DGCGTGTCAT
201: FCGYGNIGNG N

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.