Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 4
- peroxisome 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400026433 | Potato | nucleus | 96.35 | 96.86 |
VIT_10s0003g01280.t01 | Wine grape | nucleus | 72.92 | 80.0 |
KRH42865 | Soybean | plastid | 67.71 | 77.84 |
KRH21273 | Soybean | nucleus | 70.31 | 74.59 |
KRH11015 | Soybean | nucleus | 69.79 | 74.03 |
Solyc10g008000.1.1 | Tomato | nucleus | 64.06 | 69.1 |
Solyc07g062470.2.1 | Tomato | nucleus | 51.56 | 67.35 |
Solyc12g014260.1.1 | Tomato | nucleus | 67.19 | 62.93 |
CDX77619 | Canola | cytosol | 30.73 | 60.2 |
AT4G18610.1 | Thale cress | nucleus | 59.38 | 59.69 |
Solyc09g025280.1.1 | Tomato | nucleus | 53.12 | 59.65 |
CDY01557 | Canola | nucleus | 58.85 | 59.16 |
CDY67351 | Canola | nucleus | 59.38 | 59.07 |
Solyc10g007310.1.1 | Tomato | plastid | 65.1 | 58.69 |
CDX76510 | Canola | nucleus | 58.85 | 58.55 |
CDY34056 | Canola | nucleus | 58.85 | 58.55 |
CDX87760 | Canola | nucleus | 54.69 | 58.33 |
CDX78877 | Canola | nucleus | 59.38 | 58.16 |
Bra021000.1-P | Field mustard | nucleus, plastid | 58.33 | 58.03 |
Bra021995.1-P | Field mustard | nucleus | 54.17 | 57.46 |
CDY06030 | Canola | nucleus | 54.17 | 57.46 |
Bra013330.1-P | Field mustard | nucleus | 58.33 | 57.14 |
Solyc04g009980.2.1 | Tomato | nucleus, plastid | 50.52 | 53.89 |
Solyc09g090180.1.1 | Tomato | plastid | 57.81 | 53.37 |
Solyc02g069510.1.1 | Tomato | nucleus | 49.48 | 52.49 |
Solyc06g083860.2.1 | Tomato | nucleus | 54.69 | 48.17 |
Solyc06g082210.1.1 | Tomato | nucleus | 54.69 | 47.3 |
Solyc05g055020.2.1 | Tomato | nucleus | 50.52 | 45.97 |
Protein Annotations
MapMan:35.1 | InterPro:ALOG_dom | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | UniProt:K4B8Q9 | PFAM:PF04852 | PFscan:PS51697 |
PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 | EnsemblPlantsGene:Solyc02g076820.2 | EnsemblPlants:Solyc02g076820.2.1 | UniParc:UPI000276793E | SEG:seg |
Description
No Description!
Coordinates
chr2:+:41941491..41947307
Molecular Weight (calculated)
21364.6 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.758
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPSTIVMTK ELSAGSSRSG GEQLQNNNPA PLSRYESQKR RDWNTFGQYL KNQRPPVPLS QCNCNHVLEF LRYLDQFGKT KVHLHGCVFF GQPDPPAPCT
101: CPLRQAWGSL DALIGRLRAA YEENGGSPEN NPFGNGAIRL YLREVKECQA KARGIPYKKK KKRKLNNNSI KPIGAGVGAS ADQHKNLMQA NI
101: CPLRQAWGSL DALIGRLRAA YEENGGSPEN NPFGNGAIRL YLREVKECQA KARGIPYKKK KKRKLNNNSI KPIGAGVGAS ADQHKNLMQA NI
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.