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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 3
  • mitochondrion 1
  • nucleus 4
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, peroxisome, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:plastid
PTS1:peroxisome
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400026433 Potato nucleus 96.35 96.86
VIT_10s0003g01280.t01 Wine grape nucleus 72.92 80.0
KRH42865 Soybean plastid 67.71 77.84
KRH21273 Soybean nucleus 70.31 74.59
KRH11015 Soybean nucleus 69.79 74.03
Solyc10g008000.1.1 Tomato nucleus 64.06 69.1
Solyc07g062470.2.1 Tomato nucleus 51.56 67.35
Solyc12g014260.1.1 Tomato nucleus 67.19 62.93
CDX77619 Canola cytosol 30.73 60.2
AT4G18610.1 Thale cress nucleus 59.38 59.69
Solyc09g025280.1.1 Tomato nucleus 53.12 59.65
CDY01557 Canola nucleus 58.85 59.16
CDY67351 Canola nucleus 59.38 59.07
Solyc10g007310.1.1 Tomato plastid 65.1 58.69
CDX76510 Canola nucleus 58.85 58.55
CDY34056 Canola nucleus 58.85 58.55
CDX87760 Canola nucleus 54.69 58.33
CDX78877 Canola nucleus 59.38 58.16
Bra021000.1-P Field mustard nucleus, plastid 58.33 58.03
Bra021995.1-P Field mustard nucleus 54.17 57.46
CDY06030 Canola nucleus 54.17 57.46
Bra013330.1-P Field mustard nucleus 58.33 57.14
Solyc04g009980.2.1 Tomato nucleus, plastid 50.52 53.89
Solyc09g090180.1.1 Tomato plastid 57.81 53.37
Solyc02g069510.1.1 Tomato nucleus 49.48 52.49
Solyc06g083860.2.1 Tomato nucleus 54.69 48.17
Solyc06g082210.1.1 Tomato nucleus 54.69 47.3
Solyc05g055020.2.1 Tomato nucleus 50.52 45.97
Protein Annotations
MapMan:35.1InterPro:ALOG_domGO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009299GO:GO:0009416
GO:GO:0009628GO:GO:0009987InterPro:IPR006936UniProt:K4B8Q9PFAM:PF04852PFscan:PS51697
PANTHER:PTHR31165PANTHER:PTHR31165:SF8EnsemblPlantsGene:Solyc02g076820.2EnsemblPlants:Solyc02g076820.2.1UniParc:UPI000276793ESEG:seg
Description
No Description!
Coordinates
chr2:+:41941491..41947307
Molecular Weight (calculated)
21364.6 Da
IEP (calculated)
10.275
GRAVY (calculated)
-0.758
Length
192 amino acids
Sequence
(BLAST)
001: MNPSTIVMTK ELSAGSSRSG GEQLQNNNPA PLSRYESQKR RDWNTFGQYL KNQRPPVPLS QCNCNHVLEF LRYLDQFGKT KVHLHGCVFF GQPDPPAPCT
101: CPLRQAWGSL DALIGRLRAA YEENGGSPEN NPFGNGAIRL YLREVKECQA KARGIPYKKK KKRKLNNNSI KPIGAGVGAS ADQHKNLMQA NI
Best Arabidopsis Sequence Match ( AT2G42610.1 )
(BLAST)
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.