Factsheet for Bra013330.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78877	Canola	nucleus	97.45	97.45
CDY67351	Canola	nucleus	95.92	97.41
AT4G18610.1	Thale cress	nucleus	90.31	92.67
Bra021000.1-P	Field mustard	nucleus, plastid	88.78	90.16
Bra021995.1-P	Field mustard	nucleus	67.35	72.93
KRH42865	Soybean	plastid	56.63	66.47
VIT_10s0003g01280.t01	Wine grape	nucleus	57.65	64.57
Bra000269.1-P	Field mustard	nucleus	58.16	64.41
Bra016865.1-P	Field mustard	nucleus	57.65	64.2
Bra004711.1-P	Field mustard	nucleus	54.59	64.07
KRH11015	Soybean	nucleus	58.67	63.54
KRH21273	Soybean	nucleus	58.67	63.54
PGSC0003DMT400026433	Potato	nucleus	58.16	59.69
Solyc02g076820.2.1	Tomato	plastid	57.14	58.33
Bra018337.1-P	Field mustard	cytosol	48.47	57.58
Bra035066.1-P	Field mustard	nucleus	54.08	55.79
Bra023738.1-P	Field mustard	plastid	48.47	53.98
Bra008382.1-P	Field mustard	nucleus	52.04	53.4
Bra015551.1-P	Field mustard	nucleus, plastid	51.53	51.01
Bra020365.1-P	Field mustard	nucleus	46.43	50.28
Bra014935.1-P	Field mustard	plastid	50.51	49.75
Bra002642.1-P	Field mustard	nucleus, plastid	45.92	49.18
Bra001109.1-P	Field mustard	nucleus, plastid	47.45	48.95
Bra031552.1-P	Field mustard	nucleus	48.47	47.98
Bra020610.1-P	Field mustard	nucleus, plastid	46.43	47.64
Bra040188.1-P	Field mustard	nucleus, plastid	47.45	47.21
Bra036134.1-P	Field mustard	nucleus, plastid	45.92	46.88
Bra009997.1-P	Field mustard	plastid	45.92	46.88
Bra003637.1-P	Field mustard	nucleus	37.24	45.62
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	43.37	45.45
Bra018263.1-P	Field mustard	nucleus	46.43	42.33
Bra021707.1-P	Field mustard	nucleus	46.43	41.94
Bra040137.1-P	Field mustard	nucleus, plastid	46.94	30.98

Protein Annotations

EnsemblPlants:Bra013330.1	EnsemblPlants:Bra013330.1-P	EnsemblPlantsGene:Bra013330	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF8	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002546261	UniProt:M4DA20
MapMan:35.1	:	:	:	:	:

Description

AT4G18610 (E=2e-074) LSH9 | LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)

Coordinates

chrA01:+:5026148..5026738

Molecular Weight (calculated)

22158.2 Da

IEP (calculated)

10.588

GRAVY (calculated)

-0.912

Length

196 amino acids

Sequence
(BLAST)

001: MMSSEHHTPT KDPPDHPSSS SNHLKQPLPS QPQPQQPLSR YESQKRRDWN TFIQYLKSQN PPLMISQFDY THVLGFLRYL AQFGKTKVHR QACVFFGQPD
101: PSGPCTCPLK QAWGSLDALI GRLRAAYEEH GGGSPDTNPF ANGSIRVHLR EVRESQAKAR GIPYRKKKRR RKTINDVVVV KKDVANSSST HNQSSA

Best Arabidopsis Sequence Match ( AT4G18610.1 )
(BLAST)

001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T

Arabidopsis Description

LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.