Factsheet for Bra001109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74186	Canola	nucleus, plastid	100.0	100.0
Bra040188.1-P	Field mustard	nucleus, plastid	86.32	83.25
AT3G04510.1	Thale cress	nucleus, plastid	84.74	80.1
Bra009997.1-P	Field mustard	plastid	75.79	75.0
Bra020610.1-P	Field mustard	nucleus, plastid	75.26	74.87
Bra036134.1-P	Field mustard	nucleus, plastid	74.74	73.96
KRH34151	Soybean	plastid	62.63	67.61
GSMUA_Achr11P...	Banana	nucleus	33.16	67.02
KRG92633	Soybean	nucleus	63.16	63.16
Zm00001d025863_P001	Maize	nucleus	55.79	63.1
KRG97044	Soybean	plastid	60.53	62.84
VIT_14s0036g00540.t01	Wine grape	plastid	63.16	62.83
Bra023738.1-P	Field mustard	plastid	57.89	62.5
KRH68792	Soybean	plastid	58.95	60.87
Bra018337.1-P	Field mustard	cytosol	52.11	60.0
Bra014935.1-P	Field mustard	plastid	62.11	59.3
Solyc04g009980.2.1	Tomato	nucleus, plastid	55.79	58.89
PGSC0003DMT400060169	Potato	nucleus, plastid	64.21	58.37
Solyc05g055020.2.1	Tomato	nucleus	64.21	57.82
PGSC0003DMT400029945	Potato	nucleus	55.26	57.38
GSMUA_Achr5P18640_001	Banana	nucleus	51.05	56.4
Bra004711.1-P	Field mustard	nucleus	48.42	55.09
TraesCS6B01G256500.1	Wheat	nucleus	57.89	55.0
TraesCS6D01G209700.1	Wheat	nucleus	58.42	54.95
TraesCS6A01G225000.1	Wheat	nucleus	58.42	54.95
GSMUA_Achr5P03870_001	Banana	nucleus	50.0	54.91
EES11114	Sorghum	nucleus	57.37	54.77
Zm00001d003057_P001	Maize	nucleus	57.37	54.5
Os04t0516200-01	Rice	nucleus	57.89	54.46
HORVU6Hr1G058340.2	Barley	nucleus	58.42	54.41
GSMUA_Achr5P14570_001	Banana	nucleus	49.47	54.34
HORVU2Hr1G089190.1	Barley	nucleus	56.84	54.27
TraesCS2D01G378900.1	Wheat	nucleus	57.37	54.23
Bra020365.1-P	Field mustard	nucleus	51.58	54.14
Zm00001d017263_P001	Maize	nucleus	57.89	53.92
KXG30661	Sorghum	nucleus	58.95	53.85
TraesCS2A01G382500.1	Wheat	nucleus	56.84	53.73
TraesCS2B01G399800.1	Wheat	nucleus	56.84	53.73
GSMUA_Achr4P21940_001	Banana	nucleus	49.47	53.71
Zm00001d051143_P001	Maize	nucleus	56.84	53.47
Os10t0478000-01	Rice	nucleus	57.37	53.43
GSMUA_AchrUn_...	Banana	nucleus	43.16	53.25
GSMUA_Achr1P09270_001	Banana	nucleus	47.89	52.91
Bra016865.1-P	Field mustard	nucleus	48.95	52.84
Bra018263.1-P	Field mustard	nucleus	59.47	52.56
Bra000269.1-P	Field mustard	nucleus	48.95	52.54
Bra002642.1-P	Field mustard	nucleus, plastid	50.53	52.46
TraesCS1B01G172100.1	Wheat	nucleus	56.84	52.43
TraesCS1D01G153700.1	Wheat	nucleus	56.84	52.43
Zm00001d014032_P001	Maize	nucleus	57.89	52.38
Bra021707.1-P	Field mustard	nucleus	59.47	52.07
GSMUA_Achr1P05650_001	Banana	nucleus	44.74	51.83
Os02t0623400-00	Rice	nucleus	56.84	51.67
Zm00001d032696_P001	Maize	nucleus	57.89	51.64
Bra015551.1-P	Field mustard	nucleus, plastid	53.68	51.52
GSMUA_Achr4P28760_001	Banana	nucleus	48.95	50.82
Bra031552.1-P	Field mustard	nucleus	52.63	50.51
Bra021995.1-P	Field mustard	nucleus	47.89	50.28
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	49.47	50.27
KXG38327	Sorghum	nucleus	58.42	49.78
Bra040137.1-P	Field mustard	nucleus, plastid	77.37	49.49
Bra035066.1-P	Field mustard	nucleus	49.47	49.47
Bra021000.1-P	Field mustard	nucleus, plastid	49.47	48.7
HORVU1Hr1G041240.5	Barley	nucleus	57.37	48.02
Bra008382.1-P	Field mustard	nucleus	47.89	47.64
Bra013330.1-P	Field mustard	nucleus	48.95	47.45
GSMUA_Achr6P36540_001	Banana	nucleus	38.95	45.96
TraesCS1A01G154900.1	Wheat	nucleus	56.84	44.81
Zm00001d051966_P001	Maize	nucleus	57.89	44.72
Zm00001d018433_P001	Maize	nucleus	57.37	44.13
Os02t0811000-01	Rice	nucleus	57.37	43.95
EES05986	Sorghum	nucleus	57.89	43.82
TraesCS6A01G377300.1	Wheat	nucleus	57.89	43.65
TraesCS6B01G414700.1	Wheat	nucleus	57.89	43.65
TraesCS6D01G361900.1	Wheat	nucleus	57.89	43.65
Bra003637.1-P	Field mustard	nucleus	35.79	42.5
HORVU6Hr1G088790.1	Barley	nucleus	56.84	42.19

Protein Annotations

EnsemblPlants:Bra001109.1	EnsemblPlants:Bra001109.1-P	EnsemblPlantsGene:Bra001109	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF16	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002540959	UniProt:M4CA80
MapMan:35.1	:	:	:	:	:

Description

AT3G04510 (E=7e-081) LSH2 | LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)

Coordinates

chrA03:-:14794464..14795036

Molecular Weight (calculated)

21523.5 Da

IEP (calculated)

9.868

GRAVY (calculated)

-0.796

Length

190 amino acids

Sequence
(BLAST)

001: MDSISQNHNN KNPSTTLSAQ PPTTSRYENQ KRRDWNTFCQ YLRNHRPPLS LPSCSGAHVI EFLRYLDQFG KTKVHNQNCA FFGLPDPPEP CPCPLRQAWG
101: SLDALIGRLR AAYEENGGAP EISPFGSSSV RIFLREVRDF QAKARGVSYE KKRKRVNNKQ ITQSCLQPPL HTAALAQGQP MMAKYHHSET

Best Arabidopsis Sequence Match ( AT3G04510.1 )
(BLAST)

001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q

Arabidopsis Description

LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.