Factsheet for Bra002642.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32977	Canola	nucleus, plastid	98.91	98.91
Bra020365.1-P	Field mustard	nucleus	85.25	86.19
AT5G58500.1	Thale cress	nucleus	81.42	81.87
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	65.03	63.64
Bra015551.1-P	Field mustard	nucleus, plastid	66.67	61.62
Bra018337.1-P	Field mustard	cytosol	55.19	61.21
Bra023738.1-P	Field mustard	plastid	57.92	60.23
Bra031552.1-P	Field mustard	nucleus	65.03	60.1
Bra004711.1-P	Field mustard	nucleus	51.91	56.89
KRH72732	Soybean	nucleus	67.76	56.62
Bra016865.1-P	Field mustard	nucleus	54.1	56.25
Bra000269.1-P	Field mustard	nucleus	53.55	55.37
Bra014935.1-P	Field mustard	plastid	59.02	54.27
OQU83235	Sorghum	cytosol	51.91	53.98
PGSC0003DMT400078091	Potato	nucleus	65.57	53.81
Solyc06g082210.1.1	Tomato	nucleus	65.03	53.6
KRH17088	Soybean	nucleus	63.39	53.21
VIT_06s0004g07090.t01	Wine grape	nucleus	66.67	52.81
Bra036134.1-P	Field mustard	nucleus, plastid	54.1	51.56
Bra018263.1-P	Field mustard	nucleus	60.11	51.16
Bra009997.1-P	Field mustard	plastid	53.55	51.04
Bra020610.1-P	Field mustard	nucleus, plastid	53.01	50.79
Bra001109.1-P	Field mustard	nucleus, plastid	52.46	50.53
KRG98226	Soybean	nucleus	63.93	50.43
Bra021995.1-P	Field mustard	nucleus	49.73	50.28
Bra021707.1-P	Field mustard	nucleus	59.56	50.23
KRH30185	Soybean	nucleus	62.84	48.94
Bra040188.1-P	Field mustard	nucleus, plastid	50.82	47.21
Bra021000.1-P	Field mustard	nucleus, plastid	49.73	47.15
Bra035066.1-P	Field mustard	nucleus	48.63	46.84
Bra013330.1-P	Field mustard	nucleus	49.18	45.92
Bra008382.1-P	Field mustard	nucleus	47.54	45.55
GSMUA_Achr7P18300_001	Banana	nucleus	49.18	43.69
GSMUA_Achr6P08720_001	Banana	nucleus	46.99	43.65
TraesCS1B01G235800.1	Wheat	nucleus	65.03	42.05
TraesCS1D01G224100.1	Wheat	nucleus	65.03	41.9
TraesCS1A01G222500.1	Wheat	nucleus	65.03	41.9
HORVU1Hr1G060250.1	Barley	nucleus	64.48	41.26
Os05t0347400-01	Rice	nucleus	63.93	41.2
Zm00001d038016_P001	Maize	extracellular	65.57	39.87
Bra003637.1-P	Field mustard	nucleus	32.79	37.5
Zm00001d010507_P001	Maize	nucleus, plastid	64.48	37.34
EES19345	Sorghum	nucleus, plastid	65.03	36.62
Bra040137.1-P	Field mustard	nucleus, plastid	51.37	31.65

Protein Annotations

EnsemblPlants:Bra002642.1	EnsemblPlants:Bra002642.1-P	EnsemblPlantsGene:Bra002642	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF6	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002543745	UniProt:M4CEL1
MapMan:35.1	:	:	:	:	:

Description

AT5G58500 (E=7e-067) LSH5 | LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)

Coordinates

chrA10:-:8415804..8416355

Molecular Weight (calculated)

19744.6 Da

IEP (calculated)

10.296

GRAVY (calculated)

-0.426

Length

183 amino acids

Sequence
(BLAST)

001: MEGAAMAAAS SSSSPSRYEL QKRRDWNTFL QYLKNHKPPL TLSRCSGAHV IEFLKYLDQF GKTKVHVAAC PFFGVPYPPA QCTCPLRQAW GSLDSLIGRL
101: RAAFEEIGGG LPESNPLAAK AIRIYLKEVR ETQAKARGIP YDKKKRKRPR TAKAAQNPHD GSSGGEGAGG SGDSALVVSA TVV

Best Arabidopsis Sequence Match ( AT5G58500.1 )
(BLAST)

001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV

Arabidopsis Description

LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.