Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G235800.1 | Wheat | nucleus | 71.83 | 72.08 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 71.83 | 71.83 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 71.83 | 71.33 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 70.77 | 70.77 |
| OQU83235 | Sorghum | cytosol | 43.31 | 69.89 |
| Bra018337.1-P | Field mustard | cytosol | 39.44 | 67.88 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 39.08 | 67.27 |
| AT1G07090.1 | Thale cress | nucleus | 45.77 | 66.33 |
| CDY10247 | Canola | nucleus, plastid | 46.13 | 66.16 |
| CDY32697 | Canola | nucleus | 41.2 | 66.1 |
| CDY06675 | Canola | nucleus, plastid | 45.77 | 65.66 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 45.77 | 65.66 |
| Os01t0828900-00 | Rice | nucleus, plastid | 48.94 | 65.57 |
| Bra020365.1-P | Field mustard | nucleus | 41.55 | 65.19 |
| CDY59510 | Canola | nucleus | 41.55 | 65.19 |
| CDY59064 | Canola | nucleus | 45.42 | 65.15 |
| AT5G58500.1 | Thale cress | nucleus | 41.55 | 64.84 |
| CDX94980 | Canola | nucleus | 45.07 | 64.65 |
| CDY09940 | Canola | nucleus | 45.07 | 64.65 |
| Bra031552.1-P | Field mustard | nucleus | 45.07 | 64.65 |
| CDY20312 | Canola | nucleus | 45.07 | 64.65 |
| CDY52287 | Canola | nucleus | 45.07 | 64.65 |
| CDY32977 | Canola | nucleus, plastid | 41.55 | 64.48 |
| Zm00001d038016_P001 | Maize | extracellular | 67.96 | 64.12 |
| CDY02038 | Canola | cytosol | 36.97 | 64.02 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 41.2 | 63.93 |
| CDY61050 | Canola | nucleus | 40.49 | 62.84 |
| KRH17088 | Soybean | nucleus | 47.18 | 61.47 |
| Os02t0166800-01 | Rice | nucleus | 41.2 | 61.26 |
| KRH72732 | Soybean | nucleus | 47.18 | 61.19 |
| Os05t0472000-00 | Rice | nucleus | 51.06 | 60.92 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 67.61 | 60.76 |
| EES19345 | Sorghum | nucleus, plastid | 69.37 | 60.62 |
| Os10t0478000-01 | Rice | nucleus | 42.96 | 59.8 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 48.59 | 59.74 |
| KRG98226 | Soybean | nucleus | 48.24 | 59.05 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 38.73 | 58.82 |
| PGSC0003DMT400078091 | Potato | nucleus | 46.13 | 58.74 |
| Os04t0516200-01 | Rice | nucleus | 41.55 | 58.42 |
| Os02t0623400-00 | Rice | nucleus | 42.96 | 58.37 |
| Solyc06g082210.1.1 | Tomato | nucleus | 45.42 | 58.11 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 37.68 | 57.22 |
| KRH30185 | Soybean | nucleus | 46.83 | 56.6 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 41.2 | 55.19 |
| Os02t0811000-01 | Rice | nucleus | 43.66 | 50.0 |
| Os06t0672400-01 | Rice | nucleus | 45.77 | 46.93 |
| Os07t0139300-01 | Rice | nucleus | 38.38 | 39.49 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 38.73 | 38.73 |
| Os08t0248000-00 | Rice | nucleus | 23.24 | 32.67 |
Protein Annotations
| MapMan:35.1 | EntrezGene:4338491 | ProteinID:AAV43818.1 | ProteinID:AAV44098.1 | EMBL:AB512498 | EMBL:AK106384 |
| InterPro:ALOG_dom | ProteinID:BAF17180.1 | ProteinID:BAS93508.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 |
| InterPro:IPR006936 | EnsemblPlantsGene:Os05g0347400 | EnsemblPlants:Os05t0347400-01 | PFAM:PF04852 | PFscan:PS51697 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF6 | UniProt:Q5W659 | UniParc:UPI00004548FD | RefSeq:XP_015638042.1 | SEG:seg | : |
Description
G1 LIKE PROTEIN 9Protein of unknown function DUF640 domain containing protein. (Os05t0347400-01)
Coordinates
chr5:-:16362771..16364006
Molecular Weight (calculated)
29441.8 Da
IEP (calculated)
6.364
GRAVY (calculated)
-0.672
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPSPDAPRA GAAEEQPGPS SSASAPAPAA SSNEEEGRHQ SQAQQQVQEA QPQPLAQQAP AAAGLSRYES QKRRDWNTFL QYLRNHKPPL TLPRCSGAHV
101: IEFLKYLDQF GKTKVHADGC AYFGEPNPPA PCACPLRQAW GSLDALIGRL RAAYEESGGR PESNPFAARA VRIYLREVRE AQAKARGIPY EKKRKRGAAA
201: AAAAPPVVVA PPPVVTAPDD ATGTSGGAGE DDDDDEATHS GEQQDTTPAA SPTTPPATSV GTTTAAATAA AAKGSAAKGS ATSS
101: IEFLKYLDQF GKTKVHADGC AYFGEPNPPA PCACPLRQAW GSLDALIGRL RAAYEESGGR PESNPFAARA VRIYLREVRE AQAKARGIPY EKKRKRGAAA
201: AAAAPPVVVA PPPVVTAPDD ATGTSGGAGE DDDDDEATHS GEQQDTTPAA SPTTPPATSV GTTTAAATAA AAKGSAAKGS ATSS
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.