Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G235800.1 | Wheat | nucleus | 97.89 | 98.23 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 97.89 | 97.89 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 95.42 | 94.76 |
| OQU83235 | Sorghum | cytosol | 44.72 | 72.16 |
| Os05t0347400-01 | Rice | nucleus | 71.83 | 71.83 |
| TraesCS3D01G342800.1 | Wheat | cytosol, nucleus, plastid | 52.11 | 69.81 |
| Bra018337.1-P | Field mustard | cytosol | 40.14 | 69.09 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 39.79 | 68.48 |
| Zm00001d038016_P001 | Maize | extracellular | 72.54 | 68.44 |
| AT1G07090.1 | Thale cress | nucleus | 46.13 | 66.84 |
| CDY32697 | Canola | nucleus | 41.55 | 66.67 |
| CDY06675 | Canola | nucleus, plastid | 46.13 | 66.16 |
| CDY10247 | Canola | nucleus, plastid | 46.13 | 66.16 |
| AT5G58500.1 | Thale cress | nucleus | 42.25 | 65.93 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 73.24 | 65.82 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 45.77 | 65.66 |
| CDY02038 | Canola | cytosol | 37.68 | 65.24 |
| EES19345 | Sorghum | nucleus, plastid | 74.65 | 65.23 |
| CDY59510 | Canola | nucleus | 41.55 | 65.19 |
| Bra020365.1-P | Field mustard | nucleus | 41.55 | 65.19 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 41.9 | 65.03 |
| CDY32977 | Canola | nucleus, plastid | 41.9 | 65.03 |
| CDY59064 | Canola | nucleus | 45.07 | 64.65 |
| Bra031552.1-P | Field mustard | nucleus | 44.72 | 64.14 |
| CDY20312 | Canola | nucleus | 44.72 | 64.14 |
| CDX94980 | Canola | nucleus | 44.72 | 64.14 |
| CDY09940 | Canola | nucleus | 44.72 | 64.14 |
| CDY52287 | Canola | nucleus | 44.72 | 64.14 |
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 52.11 | 63.52 |
| CDY61050 | Canola | nucleus | 40.85 | 63.39 |
| KRH17088 | Soybean | nucleus | 48.24 | 62.84 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 50.7 | 62.34 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 44.01 | 62.19 |
| KRG98226 | Soybean | nucleus | 50.0 | 61.21 |
| KRH72732 | Soybean | nucleus | 46.83 | 60.73 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 42.96 | 60.4 |
| PGSC0003DMT400078091 | Potato | nucleus | 47.18 | 60.09 |
| Solyc06g082210.1.1 | Tomato | nucleus | 45.77 | 58.56 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 42.25 | 58.25 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 37.68 | 57.22 |
| KRH30185 | Soybean | nucleus | 47.18 | 57.02 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 42.25 | 56.6 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 36.62 | 55.62 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 45.42 | 51.19 |
| TraesCS6D01G129400.1 | Wheat | nucleus | 42.61 | 46.72 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 43.31 | 45.9 |
| TraesCS2D01G255200.1 | Wheat | nucleus | 35.92 | 39.23 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 39.08 | 39.08 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G224100.1 | EnsemblPlantsGene:TraesCS1D01G224100 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:-:311988072..311988926
Molecular Weight (calculated)
29903.5 Da
IEP (calculated)
7.034
GRAVY (calculated)
-0.799
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPGPDAPRG EGASAPEESG PSSSSVAVEK AEEPQAQAQP PEGGGQQVAL QEHLQPQPLS QQPPVPAGLS RYESQKRRDW NTFLQYLRNH KPPLTLARCS
101: GAHVIEFLKY LDQFGKTKVH ADGCAYFGQP NPPAPCACPL RQAWGSLDAL IGRLRAAYEE SGGRPESNPF AARAVRIYLR EVREAQAKAR GIPYEKKKRK
201: RGSTSAPAAP PPVVTAAEAA ATSGGGEDDE DEPSQSAEQQ HTTPASPPTR SSSAGATSTT AAAAATTTTT TTRGKEKEAA EGSA
101: GAHVIEFLKY LDQFGKTKVH ADGCAYFGQP NPPAPCACPL RQAWGSLDAL IGRLRAAYEE SGGRPESNPF AARAVRIYLR EVREAQAKAR GIPYEKKKRK
201: RGSTSAPAAP PPVVTAAEAA ATSGGGEDDE DEPSQSAEQQ HTTPASPPTR SSSAGATSTT AAAAATTTTT TTRGKEKEAA EGSA
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.