Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018337.1-P | Field mustard | cytosol | 99.39 | 99.39 |
| CDY02038 | Canola | cytosol | 91.52 | 92.07 |
| CDY10247 | Canola | nucleus, plastid | 75.76 | 63.13 |
| CDY06675 | Canola | nucleus, plastid | 75.76 | 63.13 |
| CDY59064 | Canola | nucleus | 75.15 | 62.63 |
| CDY20312 | Canola | nucleus | 75.15 | 62.63 |
| CDY09940 | Canola | nucleus | 75.15 | 62.63 |
| CDY52287 | Canola | nucleus | 75.15 | 62.63 |
| CDX94980 | Canola | nucleus | 75.15 | 62.63 |
| CDY32697 | Canola | nucleus | 61.82 | 57.63 |
| CDY59510 | Canola | nucleus | 61.82 | 56.35 |
| CDY32977 | Canola | nucleus, plastid | 62.42 | 56.28 |
| CDY61050 | Canola | nucleus | 62.42 | 56.28 |
| CDY35523 | Canola | plastid | 64.85 | 54.87 |
| CDX86199 | Canola | plastid | 63.64 | 54.69 |
| CDY69731 | Canola | plastid | 64.24 | 54.36 |
| CDY52479 | Canola | nucleus, plastid | 62.42 | 54.21 |
| CDY47983 | Canola | nucleus | 57.58 | 53.98 |
| CDY14848 | Canola | nucleus | 57.58 | 53.67 |
| CDY64755 | Canola | nucleus, plastid | 62.42 | 53.65 |
| CDX85083 | Canola | plastid | 64.24 | 53.27 |
| CDX77531 | Canola | plastid | 64.24 | 53.27 |
| CDY57024 | Canola | nucleus, plastid | 61.82 | 53.12 |
| OQU83235 | Sorghum | cytosol | 56.36 | 52.84 |
| CDY55387 | Canola | nucleus | 56.97 | 52.81 |
| CDY63294 | Canola | nucleus | 58.79 | 52.72 |
| CDY52505 | Canola | nucleus, plastid | 60.61 | 52.36 |
| CDY05593 | Canola | nucleus, plastid | 60.61 | 52.36 |
| CDX74186 | Canola | nucleus, plastid | 60.0 | 52.11 |
| CDY30000 | Canola | nucleus, plastid | 58.79 | 51.05 |
| CDY21126 | Canola | nucleus, plastid | 58.79 | 51.05 |
| CDY49331 | Canola | nucleus, plastid | 59.39 | 50.0 |
| CDX77619 | Canola | cytosol | 29.7 | 50.0 |
| CDY42932 | Canola | nucleus, plastid | 59.39 | 49.75 |
| CDX88480 | Canola | nucleus | 55.76 | 49.73 |
| CDY06030 | Canola | nucleus | 54.55 | 49.72 |
| CDX87760 | Canola | nucleus | 53.94 | 49.44 |
| CDY67351 | Canola | nucleus | 57.58 | 49.22 |
| CDY01557 | Canola | nucleus | 56.97 | 49.21 |
| CDX76510 | Canola | nucleus | 56.97 | 48.7 |
| CDX78877 | Canola | nucleus | 57.58 | 48.47 |
| CDX87432 | Canola | nucleus | 55.76 | 48.42 |
| CDY34056 | Canola | nucleus | 56.36 | 48.19 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 53.94 | 47.59 |
| CDY24755 | Canola | nucleus, plastid | 61.21 | 46.98 |
| CDY10790 | Canola | nucleus | 61.21 | 46.98 |
| CDY14588 | Canola | nucleus | 53.94 | 46.84 |
| CDY26881 | Canola | nucleus | 53.94 | 46.6 |
| CDY57087 | Canola | nucleus | 61.21 | 46.54 |
| CDY15426 | Canola | nucleus | 61.21 | 46.54 |
| CDY57088 | Canola | nucleus | 61.21 | 46.54 |
| GSMUA_Achr10P... | Banana | nucleus | 54.55 | 44.12 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 53.94 | 43.84 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 68.48 | 39.93 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 68.48 | 39.79 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 68.48 | 39.79 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 68.48 | 39.51 |
| Os05t0347400-01 | Rice | nucleus | 67.27 | 39.08 |
| Zm00001d038016_P001 | Maize | extracellular | 66.67 | 36.54 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 66.67 | 34.81 |
| EES19345 | Sorghum | nucleus, plastid | 66.67 | 33.85 |
Protein Annotations
| EnsemblPlants:CDY10712 | EnsemblPlantsGene:GSBRNA2T00048506001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY10712 | ProteinID:CDY10712.1 | SEG:seg | UniParc:UPI0004EF2A34 |
| UniProt:A0A078FCI1 | MapMan:35.1 | : | : | : | : |
Description
BnaA05g12240DBnaA05g12240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCI1]
Coordinates
chrLK032006:+:112148..112645
Molecular Weight (calculated)
18652.3 Da
IEP (calculated)
10.308
GRAVY (calculated)
-0.651
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPVTYGSCR PDPKPSTASA PPPSRYESQK RRDWNTFLQY LRNHKPPLTL TLCSGAHVLE FLKYLDQFGK TKVHVTTCFF FGHSDPTSPC ACPHKQAWGS
101: LDSLIGRLRA AYEENGGRPE TNPFAARAVR IYLREVKGSQ AKARGITYQK KRRQPTVTTV RLDVV
101: LDSLIGRLRA AYEENGGRPE TNPFAARAVR IYLREVKGSQ AKARGITYQK KRRQPTVTTV RLDVV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.