Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74186 | Canola | nucleus, plastid | 95.11 | 92.11 |
| CDY42932 | Canola | nucleus, plastid | 83.7 | 78.17 |
| CDY49331 | Canola | nucleus, plastid | 83.15 | 78.06 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 83.15 | 76.12 |
| CDY21126 | Canola | nucleus, plastid | 74.46 | 72.11 |
| CDY05593 | Canola | nucleus, plastid | 74.46 | 71.73 |
| CDY52505 | Canola | nucleus, plastid | 73.91 | 71.2 |
| CDY30000 | Canola | nucleus, plastid | 73.37 | 71.05 |
| CDY52479 | Canola | nucleus, plastid | 73.37 | 71.05 |
| CDX86199 | Canola | plastid | 73.37 | 70.31 |
| CDY64755 | Canola | nucleus, plastid | 73.37 | 70.31 |
| CDY57024 | Canola | nucleus, plastid | 72.83 | 69.79 |
| GSMUA_Achr11P... | Banana | nucleus | 34.24 | 67.02 |
| KRH34151 | Soybean | plastid | 63.04 | 65.91 |
| KRG97044 | Soybean | plastid | 61.96 | 62.3 |
| Zm00001d025863_P001 | Maize | nucleus | 56.52 | 61.9 |
| KRG92633 | Soybean | nucleus | 63.59 | 61.58 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 63.04 | 60.73 |
| KRH68792 | Soybean | plastid | 60.33 | 60.33 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 52.72 | 58.79 |
| CDY69731 | Canola | plastid | 61.41 | 57.95 |
| CDX77531 | Canola | plastid | 62.5 | 57.79 |
| CDX85083 | Canola | plastid | 62.5 | 57.79 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 56.52 | 57.78 |
| CDY35523 | Canola | plastid | 60.87 | 57.44 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 64.67 | 56.94 |
| Solyc05g055020.2.1 | Tomato | nucleus | 64.67 | 56.4 |
| PGSC0003DMT400029945 | Potato | nucleus | 55.98 | 56.28 |
| CDY02038 | Canola | cytosol | 50.0 | 56.1 |
| CDY32697 | Canola | nucleus | 52.72 | 54.8 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.54 | 54.07 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 58.7 | 54.0 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 59.24 | 53.96 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 59.24 | 53.96 |
| EES11114 | Sorghum | nucleus | 58.15 | 53.77 |
| CDY59510 | Canola | nucleus | 52.72 | 53.59 |
| Zm00001d003057_P001 | Maize | nucleus | 58.15 | 53.5 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 59.24 | 53.43 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 57.61 | 53.27 |
| CDX77619 | Canola | cytosol | 28.26 | 53.06 |
| Os04t0516200-01 | Rice | nucleus | 58.15 | 52.97 |
| Zm00001d017263_P001 | Maize | nucleus | 58.7 | 52.94 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 57.61 | 52.74 |
| Zm00001d051143_P001 | Maize | nucleus | 57.61 | 52.48 |
| Os10t0478000-01 | Rice | nucleus | 58.15 | 52.45 |
| KXG30661 | Sorghum | nucleus | 59.24 | 52.4 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 57.07 | 52.24 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 57.07 | 52.24 |
| CDY47983 | Canola | nucleus | 49.46 | 51.7 |
| CDY55387 | Canola | nucleus | 50.0 | 51.69 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 48.37 | 51.45 |
| Zm00001d014032_P001 | Maize | nucleus | 58.7 | 51.43 |
| CDY14848 | Canola | nucleus | 49.46 | 51.41 |
| CDY32977 | Canola | nucleus, plastid | 51.09 | 51.37 |
| CDY61050 | Canola | nucleus | 51.09 | 51.37 |
| CDY10790 | Canola | nucleus | 59.78 | 51.16 |
| CDY24755 | Canola | nucleus, plastid | 59.78 | 51.16 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 57.07 | 50.97 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 57.07 | 50.97 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.83 | 50.87 |
| Os02t0623400-00 | Rice | nucleus | 57.61 | 50.72 |
| Zm00001d032696_P001 | Maize | nucleus | 58.7 | 50.7 |
| CDY15426 | Canola | nucleus | 59.78 | 50.69 |
| CDY57087 | Canola | nucleus | 59.78 | 50.69 |
| CDY57088 | Canola | nucleus | 59.78 | 50.69 |
| CDY06675 | Canola | nucleus, plastid | 54.35 | 50.51 |
| CDY10247 | Canola | nucleus, plastid | 54.35 | 50.51 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 47.83 | 50.29 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 51.09 | 50.27 |
| CDX94980 | Canola | nucleus | 53.8 | 50.0 |
| CDY09940 | Canola | nucleus | 53.8 | 50.0 |
| CDY20312 | Canola | nucleus | 53.8 | 50.0 |
| CDY52287 | Canola | nucleus | 53.8 | 50.0 |
| CDY59064 | Canola | nucleus | 53.8 | 50.0 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 46.74 | 50.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.85 | 50.0 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 44.02 | 49.39 |
| CDX88480 | Canola | nucleus | 49.46 | 49.19 |
| CDY06030 | Canola | nucleus | 48.37 | 49.17 |
| CDX87760 | Canola | nucleus | 47.83 | 48.89 |
| KXG38327 | Sorghum | nucleus | 58.7 | 48.43 |
| CDY01557 | Canola | nucleus | 50.0 | 48.17 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 47.83 | 48.09 |
| CDX87432 | Canola | nucleus | 49.46 | 47.89 |
| CDX76510 | Canola | nucleus | 50.0 | 47.67 |
| CDY67351 | Canola | nucleus | 50.0 | 47.67 |
| CDY34056 | Canola | nucleus | 49.46 | 47.15 |
| CDX78877 | Canola | nucleus | 50.0 | 46.94 |
| CDY14588 | Canola | nucleus | 48.37 | 46.84 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 57.61 | 46.7 |
| CDY26881 | Canola | nucleus | 48.37 | 46.6 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 38.59 | 44.1 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 57.07 | 43.57 |
| Zm00001d051966_P001 | Maize | nucleus | 57.61 | 43.09 |
| Zm00001d018433_P001 | Maize | nucleus | 57.07 | 42.51 |
| Os02t0811000-01 | Rice | nucleus | 57.07 | 42.34 |
| EES05986 | Sorghum | nucleus | 57.61 | 42.23 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 57.61 | 42.06 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 57.61 | 42.06 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 57.61 | 42.06 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 56.52 | 40.62 |
Protein Annotations
| EnsemblPlants:CDY63294 | EnsemblPlantsGene:GSBRNA2T00039152001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY63294 | ProteinID:CDY63294.1 | SEG:seg | UniParc:UPI0004EDD4EF |
| UniProt:A0A078JB96 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g73240DBnaC03g73240D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JB96]
Coordinates
chrLK034276:+:23344..23898
Molecular Weight (calculated)
21016.0 Da
IEP (calculated)
9.791
GRAVY (calculated)
-0.786
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLISKNHKN KYPNTTTTSR YENQKRRDWN TFCQYLRNHC PTLSLTSCSG AHVIEFLRYL DQFGKTKVHN QNCAFFGLPD PPEPCPCPLR QAWGSLDALI
101: GRLRAAYEEN GGAPEISPFG SSSVRIFLRE VRDFQAKARG VSYEKKRKRV NNKQITQSCL QPPQHTAALA QGQPMMAKYH HSET
101: GRLRAAYEEN GGAPEISPFG SSSVRIFLRE VRDFQAKARG VSYEKKRKRV NNKQITQSCL QPPQHTAALA QGQPMMAKYH HSET
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.