Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_17s0000g07580.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28490.1 | VIT_17s0000g07580.t01 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 37.17 | 75.53 |
| KRH34151 | Soybean | plastid | 69.11 | 75.0 |
| KRG92633 | Soybean | nucleus | 72.25 | 72.63 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 65.97 | 68.85 |
| KRG97044 | Soybean | plastid | 65.97 | 68.85 |
| Zm00001d025863_P001 | Maize | nucleus | 59.69 | 67.86 |
| KRH68792 | Soybean | plastid | 64.4 | 66.85 |
| CDY52479 | Canola | nucleus, plastid | 66.49 | 66.84 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 65.97 | 66.32 |
| CDY64755 | Canola | nucleus, plastid | 66.49 | 66.15 |
| CDY57024 | Canola | nucleus, plastid | 66.49 | 66.15 |
| CDY05593 | Canola | nucleus, plastid | 65.97 | 65.97 |
| CDY52505 | Canola | nucleus, plastid | 65.97 | 65.97 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 69.11 | 65.67 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 65.97 | 65.62 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 65.44 | 65.44 |
| CDX86199 | Canola | plastid | 65.44 | 65.1 |
| Bra009997.1-P | Field mustard | plastid | 64.4 | 64.06 |
| CDX74186 | Canola | nucleus, plastid | 62.83 | 63.16 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 62.83 | 63.16 |
| CDY63294 | Canola | nucleus | 60.73 | 63.04 |
| CDY21126 | Canola | nucleus, plastid | 61.78 | 62.11 |
| EES11114 | Sorghum | nucleus | 64.4 | 61.81 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 55.5 | 61.63 |
| CDY30000 | Canola | nucleus, plastid | 61.26 | 61.58 |
| Zm00001d003057_P001 | Maize | nucleus | 64.4 | 61.5 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 63.87 | 61.31 |
| CDY49331 | Canola | nucleus, plastid | 62.83 | 61.22 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 57.59 | 61.11 |
| CDY42932 | Canola | nucleus, plastid | 62.83 | 60.91 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 63.87 | 60.7 |
| PGSC0003DMT400029945 | Potato | nucleus | 58.12 | 60.66 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 63.35 | 60.5 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 52.88 | 60.48 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 62.3 | 60.41 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 63.35 | 60.2 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 63.35 | 60.2 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 63.35 | 59.9 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 63.35 | 59.9 |
| Os04t0516200-01 | Rice | nucleus | 63.35 | 59.9 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 62.83 | 59.7 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 53.93 | 59.54 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 54.45 | 59.43 |
| Zm00001d051143_P001 | Maize | nucleus | 62.83 | 59.41 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 63.35 | 59.31 |
| Zm00001d014032_P001 | Maize | nucleus | 64.92 | 59.05 |
| Os10t0478000-01 | Rice | nucleus | 62.83 | 58.82 |
| Zm00001d017263_P001 | Maize | nucleus | 62.3 | 58.33 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 53.4 | 58.29 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 62.83 | 58.25 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 62.83 | 58.25 |
| KXG30661 | Sorghum | nucleus | 63.35 | 58.17 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 52.36 | 57.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.6 | 57.79 |
| Zm00001d032696_P001 | Maize | nucleus | 64.4 | 57.75 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 62.3 | 56.94 |
| Solyc05g055020.2.1 | Tomato | nucleus | 62.83 | 56.87 |
| Os02t0623400-00 | Rice | nucleus | 61.26 | 55.98 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 50.26 | 55.81 |
| KXG38327 | Sorghum | nucleus | 64.92 | 55.61 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 52.36 | 54.64 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 45.55 | 53.05 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 62.3 | 52.42 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 42.41 | 50.31 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 62.83 | 49.79 |
| Zm00001d018433_P001 | Maize | nucleus | 63.87 | 49.39 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 59.69 | 49.35 |
| Zm00001d051966_P001 | Maize | nucleus | 63.35 | 49.19 |
| VIT_10s0003g05690.t01 | Wine grape | plastid | 63.35 | 48.79 |
| EES05986 | Sorghum | nucleus | 63.87 | 48.61 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 62.83 | 47.62 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 62.83 | 47.62 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 62.83 | 47.62 |
| Os02t0811000-01 | Rice | nucleus | 61.78 | 47.58 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 61.78 | 46.09 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 52.36 | 45.45 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 61.78 | 39.73 |
Protein Annotations
| EntrezGene:100260366 | wikigene:100260366 | MapMan:35.1 | InterPro:ALOG_dom | ProteinID:CCB47657 | ProteinID:CCB47657.1 |
| UniProt:F6H618 | EMBL:FN595241 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
| GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | EntrezGene:LOC100260366 | wikigene:LOC100260366 | PFAM:PF04852 |
| PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 | UniParc:UPI0002108FF3 | ArrayExpress:VIT_14s0036g00540 | EnsemblPlantsGene:VIT_14s0036g00540 |
| EnsemblPlants:VIT_14s0036g00540.t01 | RefSeq:XP_002267312 | RefSeq:XP_002267312.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr14:+:10440878..10442486
Molecular Weight (calculated)
21266.4 Da
IEP (calculated)
10.416
GRAVY (calculated)
-0.616
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVSQSGNP NSVSTIINPN NPNTSSTISS PAVYAPSRYE NQKRRDWNTF GQYLRNHRPP LSLSLCNGAH VLEFLRYLDQ FGKTKVHNQT CPFFGLKNPP
101: APCPCPLRQA WGSLDALIGR LRAAYEEHGG KPEANPFGAR AVRLYLREVR DFQAKARGVS YEKKRKRSKP KLAPPPAGAS IEINGLLEPL L
101: APCPCPLRQA WGSLDALIGR LRAAYEEHGG KPEANPFGAR AVRLYLREVR DFQAKARGVS YEKKRKRSKP KLAPPPAGAS IEINGLLEPL L
001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
Arabidopsis Description
LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.