Factsheet for Bra009997.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
extracellular 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010132.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28490.1	Bra010132.1-P	AT5G62920.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86199	Canola	plastid	98.96	98.96
Bra036134.1-P	Field mustard	nucleus, plastid	91.67	91.67
AT5G28490.1	Thale cress	nucleus, plastid	89.58	90.53
Bra020610.1-P	Field mustard	nucleus, plastid	88.54	89.01
Bra040188.1-P	Field mustard	nucleus, plastid	78.65	76.65
Bra001109.1-P	Field mustard	nucleus, plastid	75.0	75.79
GSMUA_Achr11P...	Banana	nucleus	35.42	72.34
KRH34151	Soybean	plastid	63.54	69.32
Zm00001d025863_P001	Maize	nucleus	59.9	68.45
Bra023738.1-P	Field mustard	plastid	60.42	65.91
KRG97044	Soybean	plastid	61.98	65.03
VIT_14s0036g00540.t01	Wine grape	plastid	64.06	64.4
KRG92633	Soybean	nucleus	62.5	63.16
KRH68792	Soybean	plastid	59.9	62.5
Bra018337.1-P	Field mustard	cytosol	53.12	61.82
Bra014935.1-P	Field mustard	plastid	61.98	59.8
PGSC0003DMT400060169	Potato	nucleus, plastid	64.06	58.85
EES11114	Sorghum	nucleus	60.94	58.79
Zm00001d003057_P001	Maize	nucleus	60.94	58.5
Solyc04g009980.2.1	Tomato	nucleus, plastid	54.69	58.33
Bra004711.1-P	Field mustard	nucleus	50.52	58.08
HORVU2Hr1G089190.1	Barley	nucleus	59.9	57.79
GSMUA_Achr5P18640_001	Banana	nucleus	51.56	57.56
TraesCS6B01G256500.1	Wheat	nucleus	59.9	57.5
Os04t0516200-01	Rice	nucleus	60.42	57.43
TraesCS6D01G209700.1	Wheat	nucleus	60.42	57.43
TraesCS6A01G225000.1	Wheat	nucleus	60.42	57.43
Solyc05g055020.2.1	Tomato	nucleus	63.02	57.35
TraesCS2D01G378900.1	Wheat	nucleus	59.9	57.21
Zm00001d051143_P001	Maize	nucleus	59.9	56.93
Zm00001d017263_P001	Maize	nucleus	60.42	56.86
HORVU6Hr1G058340.2	Barley	nucleus	60.42	56.86
Os10t0478000-01	Rice	nucleus	60.42	56.86
PGSC0003DMT400029945	Potato	nucleus	54.17	56.83
KXG30661	Sorghum	nucleus	61.46	56.73
TraesCS2A01G382500.1	Wheat	nucleus	59.38	56.72
TraesCS2B01G399800.1	Wheat	nucleus	59.38	56.72
GSMUA_Achr5P03870_001	Banana	nucleus	50.52	56.07
Os02t0623400-00	Rice	nucleus	60.94	55.98
Bra020365.1-P	Field mustard	nucleus	52.6	55.8
Bra016865.1-P	Field mustard	nucleus	51.04	55.68
GSMUA_Achr5P14570_001	Banana	nucleus	50.0	55.49
Bra000269.1-P	Field mustard	nucleus	51.04	55.37
TraesCS1B01G172100.1	Wheat	nucleus	58.85	54.85
TraesCS1D01G153700.1	Wheat	nucleus	58.85	54.85
Zm00001d014032_P001	Maize	nucleus	59.9	54.76
GSMUA_Achr1P09270_001	Banana	nucleus	48.96	54.65
GSMUA_AchrUn_...	Banana	nucleus	43.75	54.55
Bra018263.1-P	Field mustard	nucleus	60.94	54.42
GSMUA_Achr4P21940_001	Banana	nucleus	49.48	54.29
GSMUA_Achr1P05650_001	Banana	nucleus	46.35	54.27
Zm00001d032696_P001	Maize	nucleus	59.9	53.99
Bra021707.1-P	Field mustard	nucleus	60.94	53.92
Bra002642.1-P	Field mustard	nucleus, plastid	51.04	53.55
Bra015551.1-P	Field mustard	nucleus, plastid	53.65	52.02
KXG38327	Sorghum	nucleus	60.42	52.02
GSMUA_Achr4P28760_001	Banana	nucleus	49.48	51.91
Bra031552.1-P	Field mustard	nucleus	53.12	51.52
GSMUA_Achr6P36540_001	Banana	nucleus	42.19	50.31
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	48.96	50.27
HORVU1Hr1G041240.5	Barley	nucleus	59.38	50.22
Bra021995.1-P	Field mustard	nucleus	46.35	49.17
Bra035066.1-P	Field mustard	nucleus	48.44	48.95
Bra021000.1-P	Field mustard	nucleus, plastid	47.92	47.67
Zm00001d051966_P001	Maize	nucleus	60.42	47.15
Bra008382.1-P	Field mustard	nucleus	46.88	47.12
TraesCS1A01G154900.1	Wheat	nucleus	58.85	46.89
Bra040137.1-P	Field mustard	nucleus, plastid	72.4	46.8
Zm00001d018433_P001	Maize	nucleus	59.9	46.56
Os02t0811000-01	Rice	nucleus	59.9	46.37
EES05986	Sorghum	nucleus	60.42	46.22
TraesCS6A01G377300.1	Wheat	nucleus	60.42	46.03
TraesCS6B01G414700.1	Wheat	nucleus	60.42	46.03
TraesCS6D01G361900.1	Wheat	nucleus	60.42	46.03
Bra013330.1-P	Field mustard	nucleus	46.88	45.92
HORVU6Hr1G088790.1	Barley	nucleus	59.38	44.53
Bra003637.1-P	Field mustard	nucleus	34.9	41.88

Protein Annotations

EnsemblPlants:Bra009997.1	EnsemblPlants:Bra009997.1-P	EnsemblPlantsGene:Bra009997	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF16	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000253EE59	UniProt:M4D0J9
MapMan:35.1	:	:	:	:	:

Description

AT5G28490 (E=2e-075) LSH1 | LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)

Coordinates

chrA06:-:18536245..18536823

Molecular Weight (calculated)

21703.9 Da

IEP (calculated)

10.526

GRAVY (calculated)

-0.785

Length

192 amino acids

Sequence
(BLAST)

001: MELIPHQANK NPITSAQLTP PSPSRYENQK RRDSNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ASPFASRAVR LYLREVRDFQ AKARGVSYEK KRKRVNRQRT QTLSQTQPPL PLQQQQPQQG QSVMANYSGA IV

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.