Factsheet for Bra008382.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26881	Canola	nucleus	98.95	98.95
CDY14588	Canola	nucleus	97.91	98.42
Bra035066.1-P	Field mustard	nucleus	88.48	88.95
AT1G78815.1	Thale cress	nucleus	89.01	87.18
Bra003637.1-P	Field mustard	nucleus	61.78	73.75
KRH27347	Soybean	nucleus	57.59	59.78
Bra016865.1-P	Field mustard	nucleus	54.45	59.09
Bra000269.1-P	Field mustard	nucleus	53.93	58.19
Bra004711.1-P	Field mustard	nucleus	50.79	58.08
KRH21973	Soybean	nucleus	58.12	57.22
PGSC0003DMT400039811	Potato	nucleus	60.21	56.1
Solyc12g014260.1.1	Tomato	nucleus	59.69	55.61
Bra018337.1-P	Field mustard	cytosol	46.6	53.94
Bra021000.1-P	Field mustard	nucleus, plastid	53.4	52.85
Bra023738.1-P	Field mustard	plastid	48.69	52.84
Bra013330.1-P	Field mustard	nucleus	53.4	52.04
Bra021995.1-P	Field mustard	nucleus	48.69	51.38
VIT_19s0014g01350.t01	Wine grape	nucleus	59.16	51.36
Bra020610.1-P	Field mustard	nucleus, plastid	48.69	48.69
Bra020365.1-P	Field mustard	nucleus	46.07	48.62
Bra001109.1-P	Field mustard	nucleus, plastid	47.64	47.89
Bra002642.1-P	Field mustard	nucleus, plastid	45.55	47.54
Bra014935.1-P	Field mustard	plastid	49.21	47.24
Bra036134.1-P	Field mustard	nucleus, plastid	47.12	46.88
Bra009997.1-P	Field mustard	plastid	47.12	46.88
Bra040188.1-P	Field mustard	nucleus, plastid	46.07	44.67
Bra031552.1-P	Field mustard	nucleus	46.07	44.44
Bra015551.1-P	Field mustard	nucleus, plastid	46.07	44.44
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	42.93	43.85
Bra021707.1-P	Field mustard	nucleus	47.64	41.94
Bra018263.1-P	Field mustard	nucleus	47.12	41.86
Bra040137.1-P	Field mustard	nucleus, plastid	47.12	30.3

Protein Annotations

EnsemblPlants:Bra008382.1	EnsemblPlants:Bra008382.1-P	EnsemblPlantsGene:Bra008382	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF37	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI00025466BA	UniProt:M4CVY5
MapMan:35.1	:	:	:	:	:

Description

AT1G78815 (E=1e-074) LSH7 | LSH7 (LIGHT SENSITIVE HYPOCOTYLS 7)

Coordinates

chrA02:-:15200079..15200654

Molecular Weight (calculated)

21206.9 Da

IEP (calculated)

10.075

GRAVY (calculated)

-0.983

Length

191 amino acids

Sequence
(BLAST)

001: MASPSNKGKD IAEESPSQSQ PQQPQSLPNP PALSRYESQK KRDWNTFCQY LRNQQPPVHV SQCGSNHILD FLQYLDQFGK TKVHAHGCVF FGQVEPSGQC
101: NCPLKQAWGS LDALSGRLRA AYEENGGLPE RNPFAGGGIR VFLKEVRDSQ AKARGVPYKK RKKKKKKRNP IRSDHDVEDG TAGTSSSNLP S

Best Arabidopsis Sequence Match ( AT1G78815.1 )
(BLAST)

001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS

Arabidopsis Description

LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.