Factsheet for Bra021000.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76510	Canola	nucleus	99.48	99.48
CDY34056	Canola	nucleus	97.93	97.93
AT4G18610.1	Thale cress	nucleus	91.19	92.15
Bra013330.1-P	Field mustard	nucleus	90.16	88.78
Bra021995.1-P	Field mustard	nucleus	67.88	72.38
KRH42865	Soybean	plastid	57.51	66.47
VIT_10s0003g01280.t01	Wine grape	nucleus	58.55	64.57
Bra016865.1-P	Field mustard	nucleus	58.55	64.2
Bra000269.1-P	Field mustard	nucleus	58.55	63.84
KRH21273	Soybean	nucleus	59.59	63.54
KRH11015	Soybean	nucleus	59.59	63.54
Bra004711.1-P	Field mustard	nucleus	54.92	63.47
PGSC0003DMT400026433	Potato	nucleus	59.07	59.69
Solyc02g076820.2.1	Tomato	plastid	58.03	58.33
Bra018337.1-P	Field mustard	cytosol	48.7	56.97
Bra035066.1-P	Field mustard	nucleus	54.92	55.79
Bra023738.1-P	Field mustard	plastid	49.22	53.98
Bra008382.1-P	Field mustard	nucleus	52.85	53.4
Bra015551.1-P	Field mustard	nucleus, plastid	52.33	51.01
Bra020365.1-P	Field mustard	nucleus	47.67	50.83
Bra014935.1-P	Field mustard	plastid	51.81	50.25
Bra002642.1-P	Field mustard	nucleus, plastid	47.15	49.73
Bra001109.1-P	Field mustard	nucleus, plastid	48.7	49.47
Bra020610.1-P	Field mustard	nucleus, plastid	48.19	48.69
Bra040188.1-P	Field mustard	nucleus, plastid	49.22	48.22
Bra031552.1-P	Field mustard	nucleus	49.22	47.98
Bra009997.1-P	Field mustard	plastid	47.67	47.92
Bra036134.1-P	Field mustard	nucleus, plastid	47.15	47.4
Bra002644.1-P	Field mustard	cytosol, nucleus, plastid	44.56	45.99
Bra003637.1-P	Field mustard	nucleus	37.82	45.62
Bra018263.1-P	Field mustard	nucleus	47.15	42.33
Bra021707.1-P	Field mustard	nucleus	47.15	41.94
Bra040137.1-P	Field mustard	nucleus, plastid	48.7	31.65

Protein Annotations

EnsemblPlants:Bra021000.1	EnsemblPlants:Bra021000.1-P	EnsemblPlantsGene:Bra021000	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF8	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI0002547298	UniProt:M4DWV4
MapMan:35.1	:	:	:	:	:

Description

AT4G18610 (E=5e-094) LSH9 | LSH9 (LIGHT SENSITIVE HYPOCOTYLS 9)

Coordinates

chrA08:+:10624888..10625469

Molecular Weight (calculated)

21862.7 Da

IEP (calculated)

10.425

GRAVY (calculated)

-0.974

Length

193 amino acids

Sequence
(BLAST)

001: MSSDHHTPTK DPPDRPSSSS INHKQLLPSQ PQAQQPLSRY ESQKRRDWNT FIQYLKSQNP PLMMSQFDYT HVLSFLRYLD QFGKTKVHHQ ACVFFGQPDP
101: PGPCTCPLKQ AWGSLDALIG RLRAAYEEHG GGSPDTNPFA NGSIRVHLRE VRESQAKARG IPYRKKNRRK IKNDGVVARK DVANSSTHNQ SST

Best Arabidopsis Sequence Match ( AT4G18610.1 )
(BLAST)

001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T

Arabidopsis Description

LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.