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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76510 Canola nucleus 98.45 98.45
Bra021000.1-P Field mustard nucleus, plastid 97.93 97.93
AT4G18610.1 Thale cress nucleus 90.16 91.1
CDY67351 Canola nucleus 90.67 90.67
CDX78877 Canola nucleus 91.71 90.31
CDY01557 Canola nucleus 86.01 86.91
CDX87760 Canola nucleus 69.95 75.0
CDY06030 Canola nucleus 68.91 73.48
CDX77619 Canola cytosol 35.75 70.41
KRH42865 Soybean plastid 58.03 67.07
VIT_10s0003g01280.t01 Wine grape nucleus 59.07 65.14
CDY47983 Canola nucleus 59.07 64.77
CDY14848 Canola nucleus 59.07 64.41
KRH11015 Soybean nucleus 60.1 64.09
KRH21273 Soybean nucleus 60.1 64.09
CDY55387 Canola nucleus 57.51 62.36
PGSC0003DMT400026433 Potato nucleus 59.59 60.21
Solyc02g076820.2.1 Tomato plastid 58.55 58.85
CDX88480 Canola nucleus 54.92 57.3
CDY02038 Canola cytosol 48.19 56.71
CDY10712 Canola cytosol, nucleus, plastid 48.19 56.36
CDX87432 Canola nucleus 54.92 55.79
CDY14588 Canola nucleus 53.37 54.21
CDY26881 Canola nucleus 53.37 53.93
CDY32697 Canola nucleus 47.67 51.98
CDY06675 Canola nucleus, plastid 52.85 51.52
CDY10247 Canola nucleus, plastid 52.85 51.52
CDY59510 Canola nucleus 47.67 50.83
CDY69731 Canola plastid 51.3 50.77
CDY32977 Canola nucleus, plastid 47.67 50.27
CDY61050 Canola nucleus 47.67 50.27
CDY35523 Canola plastid 50.78 50.26
CDX77531 Canola plastid 51.81 50.25
CDX85083 Canola plastid 51.81 50.25
CDX74186 Canola nucleus, plastid 48.7 49.47
CDY63294 Canola nucleus 47.15 49.46
CDY49331 Canola nucleus, plastid 49.74 48.98
CDX86199 Canola plastid 48.7 48.96
CDY21126 Canola nucleus, plastid 48.19 48.95
CDY42932 Canola nucleus, plastid 49.74 48.73
CDY59064 Canola nucleus 49.74 48.48
CDY52479 Canola nucleus, plastid 47.67 48.42
CDY30000 Canola nucleus, plastid 47.67 48.42
CDY52505 Canola nucleus, plastid 47.67 48.17
CDX94980 Canola nucleus 49.22 47.98
CDY09940 Canola nucleus 49.22 47.98
CDY52287 Canola nucleus 49.22 47.98
CDY20312 Canola nucleus 49.22 47.98
CDY57024 Canola nucleus, plastid 47.67 47.92
CDY05593 Canola nucleus, plastid 47.15 47.64
CDY64755 Canola nucleus, plastid 47.15 47.4
CDY32978 Canola cytosol, nucleus, plastid 43.52 44.92
CDY24755 Canola nucleus, plastid 47.15 42.33
CDY10790 Canola nucleus 47.15 42.33
CDY15426 Canola nucleus 47.15 41.94
CDY57088 Canola nucleus 47.15 41.94
CDY57087 Canola nucleus 47.15 41.94
Protein Annotations
EnsemblPlants:CDY34056EnsemblPlantsGene:GSBRNA2T00055940001InterPro:ALOG_domInterPro:IPR006936PANTHER:PTHR31165PANTHER:PTHR31165:SF8
PFAM:PF04852PFscan:PS51697ProteinID:CDY34056ProteinID:CDY34056.1SEG:segUniParc:UPI0004EB6FB5
UniProt:A0A078H8D5MapMan:35.1::::
Description
BnaC03g62760DBnaC03g62760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8D5]
Coordinates
chrLK032327:-:112787..113368
Molecular Weight (calculated)
21850.7 Da
IEP (calculated)
10.425
GRAVY (calculated)
-0.997
Length
193 amino acids
Sequence
(BLAST)
001: MSSDHHTPTK DPPDRPSSSS INHNQLLPSQ PQAQQPLSRY ESQKRRDWNT FIQYLKSQNP PQMMSQFDYT HVLSFLRYLD QFGKTKVHHQ ACVFFGQPDP
101: PGPCTCPLKQ AWGSLDALIG RLRAAYEEHG GGSPDTNPFA NGSIRVHLRE VRESQAKARG IPYRKKKRRK IKNDGVVARK DVANSSTHSQ SST
Best Arabidopsis Sequence Match ( AT4G18610.1 )
(BLAST)
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
Arabidopsis Description
LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.