Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX76510 | Canola | nucleus | 98.45 | 98.45 |
Bra021000.1-P | Field mustard | nucleus, plastid | 97.93 | 97.93 |
AT4G18610.1 | Thale cress | nucleus | 90.16 | 91.1 |
CDY67351 | Canola | nucleus | 90.67 | 90.67 |
CDX78877 | Canola | nucleus | 91.71 | 90.31 |
CDY01557 | Canola | nucleus | 86.01 | 86.91 |
CDX87760 | Canola | nucleus | 69.95 | 75.0 |
CDY06030 | Canola | nucleus | 68.91 | 73.48 |
CDX77619 | Canola | cytosol | 35.75 | 70.41 |
KRH42865 | Soybean | plastid | 58.03 | 67.07 |
VIT_10s0003g01280.t01 | Wine grape | nucleus | 59.07 | 65.14 |
CDY47983 | Canola | nucleus | 59.07 | 64.77 |
CDY14848 | Canola | nucleus | 59.07 | 64.41 |
KRH11015 | Soybean | nucleus | 60.1 | 64.09 |
KRH21273 | Soybean | nucleus | 60.1 | 64.09 |
CDY55387 | Canola | nucleus | 57.51 | 62.36 |
PGSC0003DMT400026433 | Potato | nucleus | 59.59 | 60.21 |
Solyc02g076820.2.1 | Tomato | plastid | 58.55 | 58.85 |
CDX88480 | Canola | nucleus | 54.92 | 57.3 |
CDY02038 | Canola | cytosol | 48.19 | 56.71 |
CDY10712 | Canola | cytosol, nucleus, plastid | 48.19 | 56.36 |
CDX87432 | Canola | nucleus | 54.92 | 55.79 |
CDY14588 | Canola | nucleus | 53.37 | 54.21 |
CDY26881 | Canola | nucleus | 53.37 | 53.93 |
CDY32697 | Canola | nucleus | 47.67 | 51.98 |
CDY06675 | Canola | nucleus, plastid | 52.85 | 51.52 |
CDY10247 | Canola | nucleus, plastid | 52.85 | 51.52 |
CDY59510 | Canola | nucleus | 47.67 | 50.83 |
CDY69731 | Canola | plastid | 51.3 | 50.77 |
CDY32977 | Canola | nucleus, plastid | 47.67 | 50.27 |
CDY61050 | Canola | nucleus | 47.67 | 50.27 |
CDY35523 | Canola | plastid | 50.78 | 50.26 |
CDX77531 | Canola | plastid | 51.81 | 50.25 |
CDX85083 | Canola | plastid | 51.81 | 50.25 |
CDX74186 | Canola | nucleus, plastid | 48.7 | 49.47 |
CDY63294 | Canola | nucleus | 47.15 | 49.46 |
CDY49331 | Canola | nucleus, plastid | 49.74 | 48.98 |
CDX86199 | Canola | plastid | 48.7 | 48.96 |
CDY21126 | Canola | nucleus, plastid | 48.19 | 48.95 |
CDY42932 | Canola | nucleus, plastid | 49.74 | 48.73 |
CDY59064 | Canola | nucleus | 49.74 | 48.48 |
CDY52479 | Canola | nucleus, plastid | 47.67 | 48.42 |
CDY30000 | Canola | nucleus, plastid | 47.67 | 48.42 |
CDY52505 | Canola | nucleus, plastid | 47.67 | 48.17 |
CDX94980 | Canola | nucleus | 49.22 | 47.98 |
CDY09940 | Canola | nucleus | 49.22 | 47.98 |
CDY52287 | Canola | nucleus | 49.22 | 47.98 |
CDY20312 | Canola | nucleus | 49.22 | 47.98 |
CDY57024 | Canola | nucleus, plastid | 47.67 | 47.92 |
CDY05593 | Canola | nucleus, plastid | 47.15 | 47.64 |
CDY64755 | Canola | nucleus, plastid | 47.15 | 47.4 |
CDY32978 | Canola | cytosol, nucleus, plastid | 43.52 | 44.92 |
CDY24755 | Canola | nucleus, plastid | 47.15 | 42.33 |
CDY10790 | Canola | nucleus | 47.15 | 42.33 |
CDY15426 | Canola | nucleus | 47.15 | 41.94 |
CDY57088 | Canola | nucleus | 47.15 | 41.94 |
CDY57087 | Canola | nucleus | 47.15 | 41.94 |
Protein Annotations
EnsemblPlants:CDY34056 | EnsemblPlantsGene:GSBRNA2T00055940001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 |
PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY34056 | ProteinID:CDY34056.1 | SEG:seg | UniParc:UPI0004EB6FB5 |
UniProt:A0A078H8D5 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g62760DBnaC03g62760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8D5]
Coordinates
chrLK032327:-:112787..113368
Molecular Weight (calculated)
21850.7 Da
IEP (calculated)
10.425
GRAVY (calculated)
-0.997
Length
193 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSDHHTPTK DPPDRPSSSS INHNQLLPSQ PQAQQPLSRY ESQKRRDWNT FIQYLKSQNP PQMMSQFDYT HVLSFLRYLD QFGKTKVHHQ ACVFFGQPDP
101: PGPCTCPLKQ AWGSLDALIG RLRAAYEEHG GGSPDTNPFA NGSIRVHLRE VRESQAKARG IPYRKKKRRK IKNDGVVARK DVANSSTHSQ SST
101: PGPCTCPLKQ AWGSLDALIG RLRAAYEEHG GGSPDTNPFA NGSIRVHLRE VRESQAKARG IPYRKKKRRK IKNDGVVARK DVANSSTHSQ SST
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
Arabidopsis Description
LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.