CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21273	Soybean	nucleus	80.24	74.03
KRH11015	Soybean	nucleus	80.24	74.03
VIT_10s0003g01280.t01	Wine grape	nucleus	76.65	73.14
KRH27046	Soybean	nucleus	75.45	72.0
KRH22284	Soybean	nucleus	67.07	70.0
KRH25774	Soybean	nucleus	73.65	69.49
KRH55744	Soybean	nucleus	73.65	68.72
Solyc02g076820.2.1	Tomato	plastid	77.84	67.71
PGSC0003DMT400026433	Potato	nucleus	77.25	67.54
KRH27347	Soybean	nucleus	73.65	66.85
KRH21973	Soybean	nucleus	73.65	63.4
AT4G18610.1	Thale cress	nucleus	67.66	59.16
KRH34151	Soybean	plastid	62.28	59.09
CDY01557	Canola	nucleus	67.07	58.64
Bra021995.1-P	Field mustard	nucleus	63.47	58.56
CDY06030	Canola	nucleus	63.47	58.56
CDX87760	Canola	nucleus	62.87	58.33
CDX77619	Canola	cytosol	34.13	58.16
CDX76510	Canola	nucleus	67.07	58.03
CDY67351	Canola	nucleus	67.07	58.03
CDY34056	Canola	nucleus	67.07	58.03
CDX78877	Canola	nucleus	67.66	57.65
Bra021000.1-P	Field mustard	nucleus, plastid	66.47	57.51
Bra013330.1-P	Field mustard	nucleus	66.47	56.63
KRG92633	Soybean	nucleus	62.87	55.26
KRG92413	Soybean	nucleus	61.68	53.65
KRG97044	Soybean	plastid	58.68	53.55
KRH68792	Soybean	plastid	58.08	52.72
KRH34391	Soybean	nucleus	62.87	51.98
KRH67397	Soybean	nucleus	61.68	50.74
KRG95674	Soybean	nucleus	61.68	50.74
KRH32192	Soybean	nucleus	62.87	50.72
KRH56293	Soybean	nucleus	62.28	49.29
KRH17088	Soybean	nucleus	60.48	46.33
KRH72732	Soybean	nucleus	59.28	45.21
KRH58368	Soybean	nucleus	63.47	44.92
KRG98226	Soybean	nucleus	62.28	44.83
KRH30185	Soybean	nucleus	61.68	43.83
KRH42251	Soybean	plastid	62.87	42.51

Protein Annotations

EntrezGene:100810655	MapMan:35.1	EMBL:ACUP02004833	InterPro:ALOG_dom	EnsemblPlantsGene:GLYMA_08G116100	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009987	UniProt:I1KSE3
InterPro:IPR006936	EnsemblPlants:KRH42865	ProteinID:KRH42865	ProteinID:KRH42865.1	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF8	UniParc:UPI0002338F72	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr8:+:8918510..8923127

Molecular Weight (calculated)

18833.5 Da

IEP (calculated)

10.429

GRAVY (calculated)

-0.814

Length

167 amino acids

Sequence
(BLAST)

001: MSTQIQNGSS SSSQQPLSRY ESQKRRDWNT FGQYLRNQSP PVPLSQCNFN HVLDFLRYLD QFGKTKVHLH GCIFFGQPTP PAPCACPLRQ AWGSLDALIG
101: RLRAAYEEHG GSPETNPFGG GAIRVYLREV KECQAKARGI PYKKKKKKRN PILKGTQRAK DIEQQAS

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.