Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG98226 | Soybean | nucleus | 76.17 | 77.16 |
| KRH72732 | Soybean | nucleus | 65.11 | 69.86 |
| KRH17088 | Soybean | nucleus | 64.68 | 69.72 |
| CDY32697 | Canola | nucleus | 50.21 | 66.67 |
| Solyc06g082210.1.1 | Tomato | nucleus | 62.98 | 66.67 |
| CDY59510 | Canola | nucleus | 50.64 | 65.75 |
| AT5G58500.1 | Thale cress | nucleus | 50.64 | 65.38 |
| Bra020365.1-P | Field mustard | nucleus | 50.21 | 65.19 |
| PGSC0003DMT400078091 | Potato | nucleus | 61.7 | 65.02 |
| OQU83235 | Sorghum | cytosol | 48.09 | 64.2 |
| KRH34151 | Soybean | plastid | 47.66 | 63.64 |
| CDY32977 | Canola | nucleus, plastid | 49.36 | 63.39 |
| CDY61050 | Canola | nucleus | 49.36 | 63.39 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 48.94 | 62.84 |
| KRG92413 | Soybean | nucleus | 51.06 | 62.5 |
| KRH42865 | Soybean | plastid | 43.83 | 61.68 |
| KRH34391 | Soybean | nucleus | 52.77 | 61.39 |
| KRH21273 | Soybean | nucleus | 46.38 | 60.22 |
| KRG97044 | Soybean | plastid | 46.81 | 60.11 |
| KRG92633 | Soybean | nucleus | 48.51 | 60.0 |
| KRH11015 | Soybean | nucleus | 45.96 | 59.67 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 47.23 | 59.36 |
| KRH27046 | Soybean | nucleus | 43.83 | 58.86 |
| KRH68792 | Soybean | plastid | 45.96 | 58.7 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 45.53 | 57.22 |
| KRG95674 | Soybean | nucleus | 49.36 | 57.14 |
| KRH32192 | Soybean | nucleus | 50.21 | 57.0 |
| KRH67397 | Soybean | nucleus | 48.94 | 56.65 |
| KRH27347 | Soybean | nucleus | 44.26 | 56.52 |
| KRH55744 | Soybean | nucleus | 42.98 | 56.42 |
| KRH25774 | Soybean | nucleus | 42.13 | 55.93 |
| KRH22284 | Soybean | nucleus | 37.87 | 55.62 |
| KRH56293 | Soybean | nucleus | 49.79 | 55.45 |
| KRH21973 | Soybean | nucleus | 44.26 | 53.61 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 43.4 | 51.78 |
| KRH58368 | Soybean | nucleus | 50.21 | 50.0 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 43.4 | 49.51 |
| KRH42251 | Soybean | plastid | 50.64 | 48.18 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 57.45 | 47.54 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 57.02 | 47.35 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 57.45 | 47.2 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 57.02 | 47.18 |
| Os05t0347400-01 | Rice | nucleus | 56.6 | 46.83 |
| Zm00001d038016_P001 | Maize | extracellular | 57.02 | 44.52 |
| EES19345 | Sorghum | nucleus, plastid | 57.87 | 41.85 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 56.17 | 41.77 |
Protein Annotations
| EntrezGene:100775798 | MapMan:35.1 | EMBL:ACUP02006888 | InterPro:ALOG_dom | EnsemblPlantsGene:GLYMA_11G165700 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | UniProt:I1LLR3 |
| InterPro:IPR006936 | EnsemblPlants:KRH30185 | ProteinID:KRH30185 | ProteinID:KRH30185.1 | PFAM:PF04852 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 | UniParc:UPI000233C514 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr11:-:15819726..15821042
Molecular Weight (calculated)
24366.5 Da
IEP (calculated)
9.682
GRAVY (calculated)
-0.521
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSASGEAPP PPQPTSVEAP PPSGSSAPAT SAPAPTQPEG SSPAPLSRYE SQKRRDWNTF LQYLQNHRPP LTLARCSGAH VIEFLKYLDQ FGKTKVHVTG
101: CPYFGHPNPP APCTCPLKQA WGSLDALIGR LRAAYEENGG RPESNPFGAR AVRTCLREVR EGQAKARGIP YEKKKRKRTT MTVSAVSSGG GSSSAVAATS
201: GGGDSGDTII GGGVGSSASL ASTTTATANV TTTTV
101: CPYFGHPNPP APCTCPLKQA WGSLDALIGR LRAAYEENGG RPESNPFGAR AVRTCLREVR EGQAKARGIP YEKKKRKRTT MTVSAVSSGG GSSSAVAATS
201: GGGDSGDTII GGGVGSSASL ASTTTATANV TTTTV
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.