Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32697 | Canola | nucleus | 85.71 | 88.14 |
| CDY59510 | Canola | nucleus | 86.26 | 86.74 |
| Bra020365.1-P | Field mustard | nucleus | 85.71 | 86.19 |
| CDY32977 | Canola | nucleus, plastid | 82.97 | 82.51 |
| CDY61050 | Canola | nucleus | 82.42 | 81.97 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 81.87 | 81.42 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 63.19 | 61.5 |
| AT1G07090.1 | Thale cress | nucleus | 65.93 | 61.22 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 61.54 | 59.89 |
| AT3G23290.2 | Thale cress | plastid | 61.54 | 57.44 |
| KRH72732 | Soybean | nucleus | 68.68 | 57.08 |
| OQU83235 | Sorghum | cytosol | 53.85 | 55.68 |
| AT2G42610.1 | Thale cress | nucleus | 53.85 | 55.37 |
| PGSC0003DMT400078091 | Potato | nucleus | 67.03 | 54.71 |
| KRH17088 | Soybean | nucleus | 65.38 | 54.59 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 69.23 | 54.55 |
| Solyc06g082210.1.1 | Tomato | nucleus | 66.48 | 54.5 |
| AT1G16910.1 | Thale cress | cytosol | 47.8 | 53.05 |
| KRG98226 | Soybean | nucleus | 67.58 | 53.02 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 54.95 | 52.63 |
| AT2G31160.1 | Thale cress | nucleus | 60.99 | 50.68 |
| KRH30185 | Soybean | nucleus | 65.38 | 50.64 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 54.95 | 49.75 |
| AT4G18610.1 | Thale cress | nucleus | 52.2 | 49.74 |
| AT1G78815.1 | Thale cress | nucleus | 51.65 | 48.21 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 51.1 | 45.15 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 47.8 | 44.16 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 65.93 | 42.4 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 65.93 | 42.25 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 65.93 | 42.25 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 65.93 | 41.96 |
| Os05t0347400-01 | Rice | nucleus | 64.84 | 41.55 |
| Zm00001d038016_P001 | Maize | extracellular | 65.38 | 39.53 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 63.74 | 36.71 |
| EES19345 | Sorghum | nucleus, plastid | 64.29 | 36.0 |
Protein Annotations
| EntrezGene:28721277 | MapMan:35.1 | UniProt:A0A178U8N9 | ProteinID:AED97060.1 | InterPro:ALOG_dom | ArrayExpress:AT5G58500 |
| EnsemblPlantsGene:AT5G58500 | RefSeq:AT5G58500 | TAIR:AT5G58500 | RefSeq:AT5G58500-TAIR-G | EnsemblPlants:AT5G58500.1 | TAIR:AT5G58500.1 |
| ProteinID:BAB10265.1 | EMBL:BT010401 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 |
| GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 | GO:GO:0090698 | InterPro:IPR006936 |
| Symbol:LSH5 | RefSeq:NP_001318830.1 | ProteinID:OAO89965.1 | PFAM:PF04852 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| UniProt:Q9FGH2 | UniParc:UPI000009DC93 | SEG:seg | : | : | : |
Description
LSH5LSH5 [Source:UniProtKB/TrEMBL;Acc:A0A178U8N9]
Coordinates
chr5:-:23645062..23646347
Molecular Weight (calculated)
19690.3 Da
IEP (calculated)
9.999
GRAVY (calculated)
-0.552
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGETAAKAA ASSSSSPSRY ESQKRRDWNT FLQYLRNHKP PLNLSRCSGA HVLEFLKYLD QFGKTKVHAT ACPFFGQPNP PSQCTCPLKQ AWGSLDALIG
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
101: RLRAAFEEIG GGLPESNPFA AKAVRIYLKE VRQTQAKARG IPYDKKKRKR PHTDTATPIA GDGDDAEGSG GAALVVTAAT TV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.