Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49331 | Canola | nucleus, plastid | 90.05 | 92.35 |
| CDY42932 | Canola | nucleus, plastid | 90.05 | 91.88 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 90.05 | 91.88 |
| CDY21126 | Canola | nucleus, plastid | 80.6 | 85.26 |
| CDX74186 | Canola | nucleus, plastid | 80.1 | 84.74 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 80.1 | 84.74 |
| CDY30000 | Canola | nucleus, plastid | 79.6 | 84.21 |
| CDY63294 | Canola | nucleus | 76.12 | 83.15 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 78.11 | 82.63 |
| GSMUA_Achr11P... | Banana | nucleus | 32.34 | 69.15 |
| KRH34151 | Soybean | plastid | 60.2 | 68.75 |
| Zm00001d025863_P001 | Maize | nucleus | 54.23 | 64.88 |
| KRG92633 | Soybean | nucleus | 60.2 | 63.68 |
| KRG97044 | Soybean | plastid | 57.71 | 63.39 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 59.7 | 62.83 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 55.72 | 62.22 |
| KRH68792 | Soybean | plastid | 56.22 | 61.41 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 63.18 | 60.77 |
| Solyc05g055020.2.1 | Tomato | nucleus | 63.18 | 60.19 |
| PGSC0003DMT400029945 | Potato | nucleus | 54.73 | 60.11 |
| AT3G23290.2 | Thale cress | plastid | 58.21 | 60.0 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 51.24 | 59.88 |
| EES11114 | Sorghum | nucleus | 56.22 | 56.78 |
| Zm00001d003057_P001 | Maize | nucleus | 56.22 | 56.5 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 55.72 | 56.0 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 56.22 | 55.94 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 56.22 | 55.94 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 55.22 | 55.78 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 47.76 | 55.49 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 56.22 | 55.39 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 55.22 | 55.22 |
| Os04t0516200-01 | Rice | nucleus | 55.22 | 54.95 |
| AT5G58500.1 | Thale cress | nucleus | 49.75 | 54.95 |
| Os10t0478000-01 | Rice | nucleus | 55.72 | 54.9 |
| AT2G42610.1 | Thale cress | nucleus | 48.26 | 54.8 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 54.73 | 54.73 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 54.73 | 54.73 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 80.6 | 54.55 |
| Zm00001d051143_P001 | Maize | nucleus | 54.73 | 54.46 |
| Zm00001d017263_P001 | Maize | nucleus | 55.22 | 54.41 |
| AT2G31160.1 | Thale cress | nucleus | 59.2 | 54.34 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 46.77 | 54.34 |
| KXG30661 | Sorghum | nucleus | 56.22 | 54.33 |
| AT1G16910.1 | Thale cress | cytosol | 44.28 | 54.27 |
| Zm00001d014032_P001 | Maize | nucleus | 56.22 | 53.81 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 46.77 | 53.71 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 43.78 | 53.66 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 54.73 | 53.4 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 54.73 | 53.4 |
| Zm00001d032696_P001 | Maize | nucleus | 56.22 | 53.05 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 45.27 | 52.91 |
| Os02t0623400-00 | Rice | nucleus | 54.73 | 52.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.3 | 52.6 |
| AT1G07090.1 | Thale cress | nucleus | 50.75 | 52.04 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 47.26 | 51.91 |
| KXG38327 | Sorghum | nucleus | 56.22 | 50.67 |
| AT4G18610.1 | Thale cress | nucleus | 47.26 | 49.74 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 55.72 | 49.34 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 39.3 | 49.07 |
| AT1G78815.1 | Thale cress | nucleus | 47.26 | 48.72 |
| Zm00001d051966_P001 | Maize | nucleus | 56.72 | 46.34 |
| Zm00001d018433_P001 | Maize | nucleus | 56.22 | 45.75 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 54.73 | 45.64 |
| EES05986 | Sorghum | nucleus | 56.72 | 45.42 |
| Os02t0811000-01 | Rice | nucleus | 55.72 | 45.16 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 56.22 | 44.84 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 56.22 | 44.84 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 56.22 | 44.84 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 55.72 | 43.75 |
Protein Annotations
| MapMan:35.1 | EntrezGene:819607 | UniProt:A0A178VF60 | ProteinID:AAF63782.1 | ProteinID:AAX23838.1 | ProteinID:AEE74090.1 |
| InterPro:ALOG_dom | ArrayExpress:AT3G04510 | EnsemblPlantsGene:AT3G04510 | RefSeq:AT3G04510 | TAIR:AT3G04510 | RefSeq:AT3G04510-TAIR-G |
| EnsemblPlants:AT3G04510.1 | TAIR:AT3G04510.1 | EMBL:AY630774 | Unigene:At.66526 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009653 | GO:GO:0009987 |
| GO:GO:0090698 | InterPro:IPR006936 | Symbol:LSH2 | RefSeq:NP_187101.1 | ProteinID:OAP04308.1 | PFAM:PF04852 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0001054 | PO:PO:0007611 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025195 | PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 | UniProt:Q9M836 |
| UniParc:UPI00000A2344 | SEG:seg | : | : | : | : |
Description
LSH2Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M836]
Coordinates
chr3:-:1215633..1216958
Molecular Weight (calculated)
22775.6 Da
IEP (calculated)
10.214
GRAVY (calculated)
-0.974
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.