Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 3
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G172100.1 | Wheat | nucleus | 100.0 | 100.0 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 94.66 | 85.9 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 99.51 | 85.06 |
| GSMUA_Achr11P... | Banana | nucleus | 38.35 | 84.04 |
| Zm00001d014032_P001 | Maize | nucleus | 81.55 | 80.0 |
| Zm00001d032696_P001 | Maize | nucleus | 82.52 | 79.81 |
| Os10t0478000-01 | Rice | nucleus | 77.67 | 78.43 |
| KXG38327 | Sorghum | nucleus | 82.04 | 75.78 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 70.87 | 72.64 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 68.93 | 70.3 |
| Solyc09g025280.1.1 | Tomato | nucleus | 58.25 | 70.18 |
| Bra023738.1-P | Field mustard | plastid | 58.74 | 68.75 |
| KRH34151 | Soybean | plastid | 58.74 | 68.75 |
| VIT_07s0005g03530.t01 | Wine grape | nucleus | 60.68 | 68.31 |
| CDY69731 | Canola | plastid | 61.16 | 64.62 |
| CDY35523 | Canola | plastid | 61.16 | 64.62 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 53.88 | 64.53 |
| PGSC0003DMT400026698 | Potato | nucleus | 57.77 | 64.32 |
| AT3G23290.2 | Thale cress | plastid | 60.68 | 64.1 |
| KRG92633 | Soybean | nucleus | 58.74 | 63.68 |
| VIT_05s0049g01170.t01 | Wine grape | nucleus | 62.14 | 63.68 |
| KRG95674 | Soybean | nucleus | 62.62 | 63.55 |
| KRG97044 | Soybean | plastid | 56.31 | 63.39 |
| KRH67397 | Soybean | nucleus | 62.14 | 63.05 |
| KRG92413 | Soybean | nucleus | 58.74 | 63.02 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 52.91 | 63.01 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 58.25 | 62.83 |
| CDX85083 | Canola | plastid | 60.68 | 62.81 |
| CDX77531 | Canola | plastid | 60.68 | 62.81 |
| Bra014935.1-P | Field mustard | plastid | 60.68 | 62.81 |
| KRH32192 | Soybean | nucleus | 62.62 | 62.32 |
| KRH68792 | Soybean | plastid | 54.85 | 61.41 |
| PGSC0003DMT400044213 | Potato | mitochondrion | 60.19 | 61.08 |
| PGSC0003DMT400051692 | Potato | nucleus | 61.65 | 61.06 |
| CDY52479 | Canola | nucleus, plastid | 56.31 | 61.05 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 56.31 | 61.05 |
| CDY57024 | Canola | nucleus, plastid | 56.8 | 60.94 |
| KRH34391 | Soybean | nucleus | 59.71 | 60.89 |
| KRH56293 | Soybean | nucleus | 62.14 | 60.66 |
| Solyc09g090180.1.1 | Tomato | plastid | 61.16 | 60.58 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 56.31 | 60.42 |
| CDY05593 | Canola | nucleus, plastid | 55.83 | 60.21 |
| CDY52505 | Canola | nucleus, plastid | 55.83 | 60.21 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 50.49 | 60.12 |
| CDX86199 | Canola | plastid | 55.83 | 59.9 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 55.34 | 59.69 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 50.49 | 59.43 |
| CDY64755 | Canola | nucleus, plastid | 55.34 | 59.38 |
| Solyc06g083860.2.1 | Tomato | nucleus | 62.62 | 59.17 |
| Bra009997.1-P | Field mustard | plastid | 54.85 | 58.85 |
| PGSC0003DMT400029945 | Potato | nucleus | 51.46 | 57.92 |
| CDY21126 | Canola | nucleus, plastid | 53.4 | 57.89 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 50.49 | 57.78 |
| CDY24755 | Canola | nucleus, plastid | 60.19 | 57.67 |
| Bra018263.1-P | Field mustard | nucleus | 60.19 | 57.67 |
| CDY10790 | Canola | nucleus | 60.19 | 57.67 |
| CDY30000 | Canola | nucleus, plastid | 52.91 | 57.37 |
| CDY57088 | Canola | nucleus | 60.19 | 57.14 |
| CDY57087 | Canola | nucleus | 60.19 | 57.14 |
| Bra021707.1-P | Field mustard | nucleus | 60.19 | 57.14 |
| CDY15426 | Canola | nucleus | 60.19 | 57.14 |
| AT2G31160.1 | Thale cress | nucleus | 60.68 | 57.08 |
| CDY63294 | Canola | nucleus | 50.97 | 57.07 |
| CDX74186 | Canola | nucleus, plastid | 52.43 | 56.84 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 52.43 | 56.84 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 50.49 | 56.83 |
| CDY49331 | Canola | nucleus, plastid | 52.43 | 55.1 |
| CDY42932 | Canola | nucleus, plastid | 52.43 | 54.82 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 53.4 | 54.73 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 66.5 | 54.37 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 51.94 | 54.31 |
| TraesCS3D01G342800.1 | Wheat | cytosol, nucleus, plastid | 55.34 | 53.77 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 52.43 | 51.67 |
| Solyc05g055020.2.1 | Tomato | nucleus | 52.91 | 51.66 |
| TraesCS6D01G129400.1 | Wheat | nucleus | 61.16 | 48.65 |
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 54.85 | 48.5 |
| TraesCS7D01G453600.1 | Wheat | nucleus | 61.16 | 47.01 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 58.25 | 42.25 |
| TraesCS2D01G255200.1 | Wheat | nucleus | 49.03 | 38.85 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 53.4 | 37.04 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G153700.1 | EnsemblPlantsGene:TraesCS1D01G153700 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF15 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr1D:-:214067830..214068450
Molecular Weight (calculated)
22305.1 Da
IEP (calculated)
10.157
GRAVY (calculated)
-0.833
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLVPQPDSP HSDGSGGATS GASSAVSSLS PGGAVSPSPS RYESQKRRDW NTFGQYLRNH RPPLSLARCS GAHVLEFLRY LDQFGKTKVH AAGCPFFGHP
101: VPPAPCPCPL RQAWGSLDAL VGRLRAAYEE NGGRPENNPF GARAVRLYLR EVREHQSRAR GVSYDKKKRR KPPHPPGSAD IPSHEGNSNG HHQYHQMPPP
201: PPGAAA
101: VPPAPCPCPL RQAWGSLDAL VGRLRAAYEE NGGRPENNPF GARAVRLYLR EVREHQSRAR GVSYDKKKRR KPPHPPGSAD IPSHEGNSNG HHQYHQMPPP
201: PPGAAA
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.