Factsheet for TraesCS2D01G255200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G254700.1	Wheat	nucleus	94.23	94.23
TraesCS2B01G267400.1	Wheat	nucleus	91.54	92.61
HORVU2Hr1G060890.2	Barley	nucleus, plastid	85.0	85.0
Zm00001d018775_P001	Maize	nucleus	58.46	59.38
EER97956	Sorghum	mitochondrion, nucleus	59.62	54.58
Os07t0139300-01	Rice	nucleus	56.54	53.26
TraesCS2D01G378900.1	Wheat	nucleus	39.62	51.24
TraesCS6D01G209700.1	Wheat	nucleus	39.62	50.99
PGSC0003DMT400054474	Potato	plastid	34.23	50.86
GSMUA_Achr4P31900_001	Banana	nucleus	36.15	50.0
GSMUA_Achr9P30540_001	Banana	nucleus	35.0	49.19
TraesCS1D01G153700.1	Wheat	nucleus	38.85	49.03
Solyc02g069510.1.1	Tomato	nucleus	33.85	48.62
GSMUA_Achr5P00260_001	Banana	nucleus	38.08	48.53
GSMUA_AchrUn_...	Banana	nucleus	38.08	47.6
GSMUA_Achr11P...	Banana	nucleus	39.23	45.95
TraesCS3D01G342800.1	Wheat	cytosol, nucleus, plastid	37.31	45.75
TraesCS1D01G294600.2	Wheat	nucleus, plastid	40.77	45.49
KRH58368	Soybean	nucleus	38.46	42.37
TraesCS6D01G129400.1	Wheat	nucleus	41.92	42.08
KRH42251	Soybean	plastid	38.85	40.89
TraesCS6D01G361900.1	Wheat	nucleus	39.62	40.87
TraesCS7D01G453600.1	Wheat	nucleus	41.92	40.67
TraesCS1D01G224100.1	Wheat	nucleus	39.23	35.92

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0048449	GO:GO:0090698	InterPro:IPR006936	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165
PANTHER:PTHR31165:SF5	EnsemblPlantsGene:TraesCS2D01G255200	EnsemblPlants:TraesCS2D01G255200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:+:307532602..307533384

Molecular Weight (calculated)

27878.2 Da

IEP (calculated)

10.187

GRAVY (calculated)

-0.461

Length

260 amino acids

Sequence
(BLAST)

001: MPATGEGPRA AQPAAARRPS RYESQKRRDW QTFVRYLAAH RPPLVLRRCS GAHVLEFLRY LDRFGKTRVH APPCPAYGVH AITATAPCQC PIGQAWGSLD
101: ALVGRLRAAF DERYSRSGGA PPQQQQDASC NPFAARAVRL YLRDVRDEQS RARGISYHKK KKKRKLATGS CIAEASSSKN GGCADANSDG ERGHKTTMTT
201: KANVAPVPQA PPPLPPLPPC LAGVPFECGS DTGSIVGGGV STGAGCYGGI YLPLFFNAFN

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.