Factsheet for Solyc06g083860.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051692	Potato	nucleus	86.7	90.87
GSMUA_Achr11P...	Banana	nucleus	35.78	82.98
Solyc09g025280.1.1	Tomato	nucleus	62.84	80.12
VIT_07s0005g03530.t01	Wine grape	nucleus	62.84	74.86
Zm00001d025863_P001	Maize	nucleus	55.5	72.02
KRH32192	Soybean	nucleus	67.89	71.5
KRH67397	Soybean	nucleus	65.14	69.95
KRH56293	Soybean	nucleus	67.43	69.67
KRG95674	Soybean	nucleus	64.68	69.46
Solyc09g090180.1.1	Tomato	plastid	63.3	66.35
Os04t0516200-01	Rice	nucleus	59.63	64.36
GSMUA_Achr5P18640_001	Banana	nucleus	50.46	63.95
CDY15426	Canola	nucleus	63.3	63.59
GSMUA_Achr5P03870_001	Banana	nucleus	50.46	63.58
TraesCS6B01G256500.1	Wheat	nucleus	58.26	63.5
CDY57087	Canola	nucleus	62.84	63.13
CDY57088	Canola	nucleus	62.84	63.13
Bra021707.1-P	Field mustard	nucleus	62.84	63.13
TraesCS6A01G225000.1	Wheat	nucleus	58.26	62.87
TraesCS6D01G209700.1	Wheat	nucleus	58.26	62.87
HORVU2Hr1G089190.1	Barley	nucleus	57.34	62.81
EES11114	Sorghum	nucleus	57.34	62.81
Bra018263.1-P	Field mustard	nucleus	61.93	62.79
CDY10790	Canola	nucleus	61.93	62.79
CDY24755	Canola	nucleus, plastid	61.93	62.79
GSMUA_Achr1P09270_001	Banana	nucleus	49.54	62.79
TraesCS2D01G378900.1	Wheat	nucleus	57.8	62.69
TraesCS1D01G153700.1	Wheat	nucleus	59.17	62.62
TraesCS1B01G172100.1	Wheat	nucleus	59.17	62.62
Zm00001d003057_P001	Maize	nucleus	57.34	62.5
Zm00001d014032_P001	Maize	nucleus	60.09	62.38
Zm00001d017263_P001	Maize	nucleus	58.26	62.25
HORVU6Hr1G058340.2	Barley	nucleus	58.26	62.25
Os02t0623400-00	Rice	nucleus	59.63	62.2
TraesCS2B01G399800.1	Wheat	nucleus	57.34	62.19
TraesCS2A01G382500.1	Wheat	nucleus	57.34	62.19
GSMUA_Achr5P14570_001	Banana	nucleus	49.08	61.85
GSMUA_Achr4P21940_001	Banana	nucleus	49.54	61.71
AT2G31160.1	Thale cress	nucleus	61.93	61.64
Zm00001d032696_P001	Maize	nucleus	60.09	61.5
KXG30661	Sorghum	nucleus	58.26	61.06
Zm00001d051143_P001	Maize	nucleus	56.42	60.89
Os10t0478000-01	Rice	nucleus	56.88	60.78
Solyc02g069510.1.1	Tomato	nucleus	49.54	59.67
KXG38327	Sorghum	nucleus	60.55	59.19
GSMUA_AchrUn_...	Banana	nucleus	41.74	59.09
Solyc07g062470.2.1	Tomato	nucleus	38.99	57.82
HORVU1Hr1G041240.5	Barley	nucleus	59.63	57.27
GSMUA_Achr4P28760_001	Banana	nucleus	47.71	56.83
GSMUA_Achr1P05650_001	Banana	nucleus	42.66	56.71
Solyc10g008000.1.1	Tomato	nucleus	45.41	55.62
Solyc04g009980.2.1	Tomato	nucleus, plastid	45.87	55.56
GSMUA_Achr6P36540_001	Banana	nucleus	40.83	55.28
Solyc02g076820.2.1	Tomato	plastid	48.17	54.69
Zm00001d051966_P001	Maize	nucleus	61.01	54.06
Solyc05g055020.2.1	Tomato	nucleus	51.83	53.55
TraesCS1A01G154900.1	Wheat	nucleus	59.17	53.53
Zm00001d018433_P001	Maize	nucleus	60.55	53.44
EES05986	Sorghum	nucleus	61.47	53.39
TraesCS6B01G414700.1	Wheat	nucleus	61.47	53.17
TraesCS6D01G361900.1	Wheat	nucleus	61.47	53.17
TraesCS6A01G377300.1	Wheat	nucleus	61.47	53.17
Os02t0811000-01	Rice	nucleus	59.17	52.02
HORVU6Hr1G088790.1	Barley	nucleus	60.55	51.56
Solyc06g082210.1.1	Tomato	nucleus	51.83	50.9
Solyc12g014260.1.1	Tomato	nucleus	47.71	50.73
Solyc10g007310.1.1	Tomato	plastid	47.25	48.36

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009299	GO:GO:0009416	GO:GO:0009628	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010199	GO:GO:0010492	GO:GO:0048441	GO:GO:0048834	GO:GO:0090698
InterPro:IPR006936	UniProt:K4CAP1	PFAM:PF04852	PFscan:PS51697	PANTHER:PTHR31165	PANTHER:PTHR31165:SF38
EnsemblPlantsGene:Solyc06g083860.2	EnsemblPlants:Solyc06g083860.2.1	UniParc:UPI000276B7C2	SEG:seg	:	:

Description

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:Projected from Arabidopsis thaliana (AT2G31160) UniProtKB/Swiss-Prot;Acc:O82268]

Coordinates

chr6:-:49158018..49160744

Molecular Weight (calculated)

24156.8 Da

IEP (calculated)

10.255

GRAVY (calculated)

-0.666

Length

218 amino acids

Sequence
(BLAST)

001: MASFTELVES SNHHHHEKIN IETVNNIEII SVSASSSSSA ATPAPASSSS RYENQKRRDW NTFGQYLRNH RPPLTLSRCS GAHVLEFLRY LDQFGKTKVH
101: TPMCPFYGHP NPPAPCPCPL KQAWGSLDAL VGRLRAAYEE NGGKPETNPF GARAVRLYLR EVRDLQSKAR GVSYEKKKKR KRPTPPPPIP PPQLLSTSVQ
201: LPLSSPPPSG KGALPFEL

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.