Factsheet for Solyc10g007310.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 4

Predictors

GFP

MS/MS

Papers

plastid: 20363867

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054899	Potato	nucleus	93.9	96.62
Solyc07g062470.2.1	Tomato	nucleus	53.05	76.87
KRH27347	Soybean	nucleus	63.85	73.91
Solyc12g014260.1.1	Tomato	nucleus	68.54	71.22
Solyc10g008000.1.1	Tomato	nucleus	58.22	69.66
KRH21973	Soybean	nucleus	63.38	69.59
Solyc02g076820.2.1	Tomato	plastid	58.69	65.1
VIT_19s0014g01350.t01	Wine grape	nucleus	64.79	62.73
Solyc09g025280.1.1	Tomato	nucleus	48.36	60.23
Solyc02g069510.1.1	Tomato	nucleus	45.54	53.59
Solyc04g009980.2.1	Tomato	nucleus, plastid	45.07	53.33
Solyc09g090180.1.1	Tomato	plastid	50.7	51.92
Solyc05g055020.2.1	Tomato	nucleus	46.95	47.39
Solyc06g083860.2.1	Tomato	nucleus	48.36	47.25
Solyc06g082210.1.1	Tomato	nucleus	48.36	46.4

Protein Annotations

MapMan:35.1	InterPro:ALOG_dom	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009299	GO:GO:0009416
GO:GO:0009628	GO:GO:0009987	InterPro:IPR006936	UniProt:K4CXR0	PFAM:PF04852	PFscan:PS51697
PANTHER:PTHR31165	PANTHER:PTHR31165:SF9	EnsemblPlantsGene:Solyc10g007310.1	EnsemblPlants:Solyc10g007310.1.1	UniParc:UPI000276B1C5	SEG:seg

Description

No Description!

Coordinates

chr10:+:1717852..1718493

Molecular Weight (calculated)

23550.8 Da

IEP (calculated)

10.428

GRAVY (calculated)

-0.739

Length

213 amino acids

Sequence
(BLAST)

001: MMSSEKIREV GEGSSSSGGA ISIIATPLNN HHRQSSSSSL STLAPTPASS SAPQLSRYES QKRRDWNTFG QYLKNQRPPI SLPQCNYNHV LDFLRYLDQF
101: GKTKVHLHGC LFFGQPEPPG PCTCPLRQAW GSLDALIGRL RAAYEENGGL QETNPFASGA IRVYLREVRD SQAKARGIPY KKKKKKKRPN LQIKASNNND
201: GATSANFQLQ STT

Best Arabidopsis Sequence Match ( AT2G42610.1 )
(BLAST)

001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS

Arabidopsis Description

LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.