Factsheet for GSMUA_Achr1P05650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P36540_001	Banana	nucleus	67.07	68.32
GSMUA_AchrUn_...	Banana	nucleus	53.66	57.14
GSMUA_Achr1P09270_001	Banana	nucleus	59.15	56.4
Bra023738.1-P	Field mustard	plastid	57.32	53.41
GSMUA_Achr5P14570_001	Banana	nucleus	56.1	53.18
GSMUA_Achr5P03870_001	Banana	nucleus	56.1	53.18
GSMUA_Achr5P18640_001	Banana	nucleus	55.49	52.91
Solyc09g025280.1.1	Tomato	nucleus	54.27	52.05
VIT_07s0005g03530.t01	Wine grape	nucleus	57.93	51.91
GSMUA_Achr4P21940_001	Banana	nucleus	54.88	51.43
CDY35523	Canola	plastid	59.76	50.26
CDY69731	Canola	plastid	59.76	50.26
KRG95674	Soybean	nucleus	62.2	50.25
KRH67397	Soybean	nucleus	62.2	50.25
AT3G23290.2	Thale cress	plastid	59.15	49.74
PGSC0003DMT400026698	Potato	nucleus	54.88	48.65
GSMUA_Achr4P28760_001	Banana	nucleus	54.27	48.63
CDY57024	Canola	nucleus, plastid	56.71	48.44
AT5G28490.1	Thale cress	nucleus, plastid	56.1	48.42
CDY52479	Canola	nucleus, plastid	56.1	48.42
KRH34151	Soybean	plastid	51.83	48.3
Bra014935.1-P	Field mustard	plastid	58.54	48.24
CDX85083	Canola	plastid	58.54	48.24
CDX77531	Canola	plastid	58.54	48.24
CDY64755	Canola	nucleus, plastid	56.1	47.92
KRG92413	Soybean	nucleus	56.1	47.92
Bra036134.1-P	Field mustard	nucleus, plastid	56.1	47.92
KRH32192	Soybean	nucleus	60.37	47.83
KRH34391	Soybean	nucleus	58.54	47.52
CDX86199	Canola	plastid	55.49	47.4
GSMUA_Achr4P31900_001	Banana	nucleus	53.66	46.81
VIT_05s0049g01170.t01	Wine grape	nucleus	57.32	46.77
CDY05593	Canola	nucleus, plastid	54.27	46.6
KRH56293	Soybean	nucleus	59.76	46.45
Bra009997.1-P	Field mustard	plastid	54.27	46.35
CDY52505	Canola	nucleus, plastid	53.66	46.07
KRG92633	Soybean	nucleus	53.05	45.79
VIT_14s0036g00540.t01	Wine grape	plastid	53.05	45.55
Bra020610.1-P	Field mustard	nucleus, plastid	53.05	45.55
GSMUA_Achr9P30540_001	Banana	nucleus	51.22	45.41
PGSC0003DMT400044213	Potato	mitochondrion	56.1	45.32
CDX74186	Canola	nucleus, plastid	51.83	44.74
Bra001109.1-P	Field mustard	nucleus, plastid	51.83	44.74
GSMUA_Achr5P00260_001	Banana	nucleus	55.49	44.61
GSMUA_Achr11P...	Banana	nucleus	47.56	44.32
GSMUA_AchrUn_...	Banana	nucleus	56.1	44.23
PGSC0003DMT400051692	Potato	nucleus	56.1	44.23
GSMUA_AchrUn_...	Banana	nucleus	50.0	44.09
CDY63294	Canola	nucleus	49.39	44.02
Solyc04g009980.2.1	Tomato	nucleus, plastid	48.17	43.89
AT3G04510.1	Thale cress	nucleus, plastid	53.66	43.78
Solyc09g090180.1.1	Tomato	plastid	55.49	43.75
PGSC0003DMT400029945	Potato	nucleus	48.78	43.72
CDY21126	Canola	nucleus, plastid	50.61	43.68
GSMUA_Achr11P...	Banana	nucleus	25.0	43.62
KRG97044	Soybean	plastid	48.17	43.17
CDY49331	Canola	nucleus, plastid	51.22	42.86
Solyc06g083860.2.1	Tomato	nucleus	56.71	42.66
CDY42932	Canola	nucleus, plastid	51.22	42.64
CDY30000	Canola	nucleus, plastid	49.39	42.63
KRH68792	Soybean	plastid	47.56	42.39
GSMUA_Achr11P...	Banana	nucleus	51.22	42.21
Bra040188.1-P	Field mustard	nucleus, plastid	50.61	42.13
GSMUA_Achr11P...	Banana	nucleus	56.1	41.44
CDY10790	Canola	nucleus	54.27	41.4
Bra018263.1-P	Field mustard	nucleus	54.27	41.4
GSMUA_Achr10P...	Banana	nucleus	51.22	41.18
CDY57088	Canola	nucleus	54.27	41.01
CDY57087	Canola	nucleus	54.27	41.01
CDY15426	Canola	nucleus	54.27	41.01
Bra021707.1-P	Field mustard	nucleus	54.27	41.01
CDY24755	Canola	nucleus, plastid	53.66	40.93
AT2G31160.1	Thale cress	nucleus	54.27	40.64
GSMUA_Achr8P01890_001	Banana	nucleus	50.0	40.39
GSMUA_Achr6P08720_001	Banana	nucleus	48.17	40.1
GSMUA_Achr5P07420_001	Banana	nucleus	51.83	40.09
GSMUA_Achr3P10070_001	Banana	nucleus	52.44	39.63
PGSC0003DMT400060169	Potato	nucleus, plastid	49.39	38.76
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	48.78	38.65
GSMUA_Achr11P...	Banana	nucleus	47.56	38.42
Solyc05g055020.2.1	Tomato	nucleus	49.39	38.39
GSMUA_Achr7P18300_001	Banana	nucleus	46.95	37.38
GSMUA_Achr5P29450_001	Banana	cytosol, nucleus, plastid	48.17	29.48
Bra040137.1-P	Field mustard	nucleus, plastid	50.61	27.95
GSMUA_Achr9P18050_001	Banana	nucleus	46.34	26.76

Protein Annotations

EnsemblPlants:GSMUA_Achr1P05650_001	EnsemblPlants:GSMUA_Achr1T05650_001	EnsemblPlantsGene:GSMUA_Achr1G05650_001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF36	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000294FF5D	UniProt:M0RXC3
MapMan:35.1	:	:	:	:	:

Description

Putative uncharacterized protein Sb06g022610 [Source:GMGC_GENE;Acc:GSMUA_Achr1G05650_001]

Coordinates

chr1:-:4652842..4653408

Molecular Weight (calculated)

18178.3 Da

IEP (calculated)

10.369

GRAVY (calculated)

-0.896

Length

164 amino acids

Sequence
(BLAST)

001: MDMIPNPDKP SSSDSCVAGP NSFPAATAPS PSRYESQKRR DWNTFCQYLK NHQPPLSLSR CSAAHVLEFL RYLDQFGKTK AWGSLDALTG RLRAAFEENG
101: GSHEANPFGA RAVRLYLREV RELQAKARGI SYDKKRKKPP RTTPSPPQHH HNPHSPPSGT TAAA

Best Arabidopsis Sequence Match ( AT5G28490.1 )
(BLAST)

001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV

Arabidopsis Description

LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.