CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35523	Canola	plastid	97.95	97.95
AT3G23290.2	Thale cress	plastid	91.28	91.28
CDX85083	Canola	plastid	92.31	90.45
CDX77531	Canola	plastid	91.79	89.95
GSMUA_Achr11P...	Banana	nucleus	37.95	78.72
PGSC0003DMT400044213	Potato	mitochondrion	73.33	70.44
Zm00001d025863_P001	Maize	nucleus	60.51	70.24
Solyc09g090180.1.1	Tomato	plastid	73.33	68.75
CDY52479	Canola	nucleus, plastid	63.08	64.74
CDY57024	Canola	nucleus, plastid	63.59	64.58
TraesCS6B01G256500.1	Wheat	nucleus	66.15	64.5
Os04t0516200-01	Rice	nucleus	66.67	64.36
HORVU2Hr1G089190.1	Barley	nucleus	65.64	64.32
EES11114	Sorghum	nucleus	65.64	64.32
CDY10712	Canola	cytosol, nucleus, plastid	54.36	64.24
TraesCS2D01G378900.1	Wheat	nucleus	66.15	64.18
CDX86199	Canola	plastid	63.08	64.06
CDY64755	Canola	nucleus, plastid	63.08	64.06
Zm00001d003057_P001	Maize	nucleus	65.64	64.0
TraesCS6D01G209700.1	Wheat	nucleus	66.15	63.86
TraesCS6A01G225000.1	Wheat	nucleus	66.15	63.86
CDY32697	Canola	nucleus	57.95	63.84
TraesCS2A01G382500.1	Wheat	nucleus	65.64	63.68
TraesCS2B01G399800.1	Wheat	nucleus	65.64	63.68
CDY02038	Canola	cytosol	53.33	63.41
GSMUA_Achr5P18640_001	Banana	nucleus	55.9	63.37
CDY05593	Canola	nucleus, plastid	62.05	63.35
CDY52505	Canola	nucleus, plastid	62.05	63.35
Zm00001d017263_P001	Maize	nucleus	66.15	63.24
HORVU6Hr1G058340.2	Barley	nucleus	66.15	63.24
CDY10790	Canola	nucleus	69.23	62.79
CDY15426	Canola	nucleus	69.74	62.67
CDY57087	Canola	nucleus	69.74	62.67
CDY57088	Canola	nucleus	69.74	62.67
KXG30661	Sorghum	nucleus	66.67	62.5
CDY59510	Canola	nucleus	57.95	62.43
GSMUA_Achr5P03870_001	Banana	nucleus	55.38	62.43
CDY24755	Canola	nucleus, plastid	68.72	62.33
Os10t0478000-01	Rice	nucleus	64.62	61.76
GSMUA_Achr1P09270_001	Banana	nucleus	54.36	61.63
Zm00001d014032_P001	Maize	nucleus	66.15	61.43
CDY63294	Canola	nucleus	57.95	61.41
Zm00001d051143_P001	Maize	nucleus	63.59	61.39
GSMUA_Achr5P14570_001	Banana	nucleus	54.36	61.27
TraesCS1B01G172100.1	Wheat	nucleus	64.62	61.16
TraesCS1D01G153700.1	Wheat	nucleus	64.62	61.16
CDX74186	Canola	nucleus, plastid	59.49	61.05
CDY21126	Canola	nucleus, plastid	59.49	61.05
Os02t0623400-00	Rice	nucleus	65.13	60.77
Zm00001d032696_P001	Maize	nucleus	66.15	60.56
CDY49331	Canola	nucleus, plastid	60.51	60.2
CDY61050	Canola	nucleus	56.41	60.11
CDY30000	Canola	nucleus, plastid	58.46	60.0
CDY42932	Canola	nucleus, plastid	60.51	59.9
GSMUA_Achr1P05650_001	Banana	nucleus	50.26	59.76
CDY47983	Canola	nucleus	53.85	59.66
CDY32977	Canola	nucleus, plastid	55.9	59.56
CDY14848	Canola	nucleus	53.85	59.32
CDY55387	Canola	nucleus	53.85	58.99
GSMUA_Achr4P21940_001	Banana	nucleus	52.82	58.86
GSMUA_AchrUn_...	Banana	nucleus	46.15	58.44
KXG38327	Sorghum	nucleus	66.15	57.85
GSMUA_Achr4P28760_001	Banana	nucleus	53.85	57.38
CDY06675	Canola	nucleus, plastid	57.95	57.07
CDY10247	Canola	nucleus, plastid	57.95	57.07
Zm00001d018433_P001	Maize	nucleus	71.79	56.68
CDX94980	Canola	nucleus	57.44	56.57
CDY09940	Canola	nucleus	57.44	56.57
CDY52287	Canola	nucleus	57.44	56.57
CDY20312	Canola	nucleus	57.44	56.57
GSMUA_Achr6P36540_001	Banana	nucleus	46.67	56.52
Zm00001d051966_P001	Maize	nucleus	70.77	56.1
Os02t0811000-01	Rice	nucleus	71.28	56.05
HORVU1Hr1G041240.5	Barley	nucleus	65.13	55.95
CDY59064	Canola	nucleus	56.41	55.56
EES05986	Sorghum	nucleus	71.28	55.38
CDY06030	Canola	nucleus	50.26	54.14
TraesCS6A01G377300.1	Wheat	nucleus	69.74	53.97
TraesCS6D01G361900.1	Wheat	nucleus	69.74	53.97
TraesCS6B01G414700.1	Wheat	nucleus	69.74	53.97
CDX87760	Canola	nucleus	49.74	53.89
CDY01557	Canola	nucleus	51.79	52.88
CDX88480	Canola	nucleus	49.74	52.43
HORVU6Hr1G088790.1	Barley	nucleus	68.72	52.34
CDY67351	Canola	nucleus	51.79	52.33
TraesCS1A01G154900.1	Wheat	nucleus	64.62	52.28
CDX77619	Canola	cytosol	26.15	52.04
CDX76510	Canola	nucleus	51.28	51.81
CDX78877	Canola	nucleus	51.79	51.53
CDY34056	Canola	nucleus	50.77	51.3
CDX87432	Canola	nucleus	49.74	51.05
CDY32978	Canola	cytosol, nucleus, plastid	48.21	50.27
CDY14588	Canola	nucleus	48.21	49.47
CDY26881	Canola	nucleus	48.21	49.21

Protein Annotations

EnsemblPlants:CDY69731	EnsemblPlantsGene:GSBRNA2T00092110001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165	PANTHER:PTHR31165:SF38
PFAM:PF04852	PFscan:PS51697	ProteinID:CDY69731	ProteinID:CDY69731.1	SEG:seg	UniParc:UPI0004EE007F
UniProt:A0A078JW20	MapMan:35.1	:	:	:	:

Description

BnaCnng65050DBnaCnng65050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JW20]

Coordinates

chrLK040190:+:2008..3205

Molecular Weight (calculated)

21415.3 Da

IEP (calculated)

10.733

GRAVY (calculated)

-0.612

Length

195 amino acids

Sequence
(BLAST)

001: MDPIHGFIGT TNISHSTNIM IAAAAVTTSS SSSSSSSGGS ATTQLSRYEN QKRRDWNTFG QYLRNHRPPL SLSRCSGAHV LEFLRYLDQF GKTKVHTQLC
101: PFFGHPNPPA PCTCPLRQAW GSLDALIGRL RAAFEENGGS PETNPFGARA VRLYLREVRD SQAKARGISY EKKKRKRPPP TPLPPPHSVI SSSPN

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.