Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67351 | Canola | nucleus | 98.47 | 100.0 |
| Bra013330.1-P | Field mustard | nucleus | 97.45 | 97.45 |
| AT4G18610.1 | Thale cress | nucleus | 92.86 | 95.29 |
| CDX76510 | Canola | nucleus | 91.84 | 93.26 |
| CDY34056 | Canola | nucleus | 90.31 | 91.71 |
| CDY01557 | Canola | nucleus | 88.27 | 90.58 |
| CDX87760 | Canola | nucleus | 70.92 | 77.22 |
| CDY06030 | Canola | nucleus | 69.39 | 75.14 |
| CDX77619 | Canola | cytosol | 35.2 | 70.41 |
| KRH42865 | Soybean | plastid | 57.65 | 67.66 |
| CDY47983 | Canola | nucleus | 59.18 | 65.91 |
| VIT_10s0003g01280.t01 | Wine grape | nucleus | 58.67 | 65.71 |
| CDY14848 | Canola | nucleus | 58.67 | 64.97 |
| KRH11015 | Soybean | nucleus | 59.69 | 64.64 |
| KRH21273 | Soybean | nucleus | 59.69 | 64.64 |
| CDY55387 | Canola | nucleus | 58.67 | 64.61 |
| PGSC0003DMT400026433 | Potato | nucleus | 59.18 | 60.73 |
| Solyc02g076820.2.1 | Tomato | plastid | 58.16 | 59.38 |
| CDY02038 | Canola | cytosol | 48.47 | 57.93 |
| CDX88480 | Canola | nucleus | 54.59 | 57.84 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 48.47 | 57.58 |
| CDX87432 | Canola | nucleus | 54.08 | 55.79 |
| CDY14588 | Canola | nucleus | 53.06 | 54.74 |
| CDY26881 | Canola | nucleus | 53.06 | 54.45 |
| CDY32697 | Canola | nucleus | 47.45 | 52.54 |
| CDY10247 | Canola | nucleus, plastid | 53.06 | 52.53 |
| CDY06675 | Canola | nucleus, plastid | 53.06 | 52.53 |
| CDY69731 | Canola | plastid | 51.53 | 51.79 |
| CDY59510 | Canola | nucleus | 47.45 | 51.38 |
| CDY35523 | Canola | plastid | 51.02 | 51.28 |
| CDY32977 | Canola | nucleus, plastid | 47.45 | 50.82 |
| CDY61050 | Canola | nucleus | 47.45 | 50.82 |
| CDX85083 | Canola | plastid | 51.53 | 50.75 |
| CDX77531 | Canola | plastid | 51.53 | 50.75 |
| CDY63294 | Canola | nucleus | 46.94 | 50.0 |
| CDX74186 | Canola | nucleus, plastid | 48.47 | 50.0 |
| CDY59064 | Canola | nucleus | 50.0 | 49.49 |
| CDY49331 | Canola | nucleus, plastid | 49.49 | 49.49 |
| CDX86199 | Canola | plastid | 48.47 | 49.48 |
| CDY21126 | Canola | nucleus, plastid | 47.96 | 49.47 |
| CDY42932 | Canola | nucleus, plastid | 49.49 | 49.24 |
| CDY52287 | Canola | nucleus | 49.49 | 48.99 |
| CDX94980 | Canola | nucleus | 49.49 | 48.99 |
| CDY09940 | Canola | nucleus | 49.49 | 48.99 |
| CDY20312 | Canola | nucleus | 49.49 | 48.99 |
| CDY30000 | Canola | nucleus, plastid | 47.45 | 48.95 |
| CDY52479 | Canola | nucleus, plastid | 47.45 | 48.95 |
| CDY52505 | Canola | nucleus, plastid | 47.45 | 48.69 |
| CDY57024 | Canola | nucleus, plastid | 47.45 | 48.44 |
| CDY05593 | Canola | nucleus, plastid | 46.94 | 48.17 |
| CDY64755 | Canola | nucleus, plastid | 46.94 | 47.92 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 42.86 | 44.92 |
| CDY10790 | Canola | nucleus | 47.45 | 43.26 |
| CDY57088 | Canola | nucleus | 47.45 | 42.86 |
| CDY57087 | Canola | nucleus | 47.45 | 42.86 |
| CDY15426 | Canola | nucleus | 47.45 | 42.86 |
| CDY24755 | Canola | nucleus, plastid | 46.94 | 42.79 |
Protein Annotations
| EnsemblPlants:CDX78877 | EnsemblPlantsGene:GSBRNA2T00131354001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF8 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDX78877 | ProteinID:CDX78877.1 | SEG:seg | UniParc:UPI0004EE3FCF |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA01g09440D
Coordinates
chrLK031816:+:583008..583598
Molecular Weight (calculated)
22241.3 Da
IEP (calculated)
10.396
GRAVY (calculated)
-0.952
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSEHHTPT KDPPDHPSSS SNHLKQPLPS QPQPQQPLSR YESQKRRDWN TFIQYLKSQN PPLMMSQFDY THVLSFLRYL DQFGKTKVHH QACVFFGQPD
101: PPGPCTCPLK QAWGSLDALI GRLRAAYEEH GGGSPDTNPF ANGSIRVHLR EVRESQAKAR GIPYRKKKRR RKTINDVVVV KKDVANSSST HNQSSA
101: PPGPCTCPLK QAWGSLDALI GRLRAAYEEH GGGSPDTNPF ANGSIRVHLR EVRESQAKAR GIPYRKKKRR RKTINDVVVV KKDVANSSST HNQSSA
001: MSSDRHTPTK DPPDHPSSSS NHHKQPLPPQ PQQPLSRYES QKRRDWNTFV QYLKSQNPPL MMSQFDYTHV LSFLRYLDQF GKTKVHHQAC VFFGQPDPPG
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
101: PCTCPLKQAW GSLDALIGRL RAAYEEHGGG SPDTNPFANG SIRVHLREVR ESQAKARGIP YRKKKRRKTK NEVVVVKKDV ANSSTPNQSF T
Arabidopsis Description
LSH9Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.