Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035066.1-P | Field mustard | nucleus | 96.22 | 93.68 |
| CDX87432 | Canola | nucleus | 96.22 | 93.68 |
| AT1G78815.1 | Thale cress | nucleus | 96.22 | 91.28 |
| CDY14588 | Canola | nucleus | 92.43 | 90.0 |
| CDY26881 | Canola | nucleus | 91.89 | 89.01 |
| CDY47983 | Canola | nucleus | 59.46 | 62.5 |
| CDY14848 | Canola | nucleus | 58.92 | 61.58 |
| KRH27347 | Soybean | nucleus | 61.08 | 61.41 |
| CDY55387 | Canola | nucleus | 57.84 | 60.11 |
| KRH21973 | Soybean | nucleus | 61.62 | 58.76 |
| PGSC0003DMT400039811 | Potato | nucleus | 64.32 | 58.05 |
| Solyc12g014260.1.1 | Tomato | nucleus | 63.78 | 57.56 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 49.73 | 55.76 |
| CDY02038 | Canola | cytosol | 49.19 | 55.49 |
| CDY01557 | Canola | nucleus | 56.76 | 54.97 |
| CDY34056 | Canola | nucleus | 57.3 | 54.92 |
| CDX76510 | Canola | nucleus | 57.3 | 54.92 |
| CDX78877 | Canola | nucleus | 57.84 | 54.59 |
| CDY67351 | Canola | nucleus | 56.76 | 54.4 |
| CDY06030 | Canola | nucleus | 52.43 | 53.59 |
| CDX87760 | Canola | nucleus | 51.89 | 53.33 |
| VIT_19s0014g01350.t01 | Wine grape | nucleus | 62.7 | 52.73 |
| CDX77619 | Canola | cytosol | 27.03 | 51.02 |
| CDY32697 | Canola | nucleus | 48.65 | 50.85 |
| CDY52479 | Canola | nucleus, plastid | 51.35 | 50.0 |
| CDY69731 | Canola | plastid | 52.43 | 49.74 |
| CDY35523 | Canola | plastid | 52.43 | 49.74 |
| CDY52505 | Canola | nucleus, plastid | 51.35 | 49.74 |
| CDY59510 | Canola | nucleus | 48.65 | 49.72 |
| CDX86199 | Canola | plastid | 51.35 | 49.48 |
| CDY64755 | Canola | nucleus, plastid | 51.35 | 49.48 |
| CDX74186 | Canola | nucleus, plastid | 50.81 | 49.47 |
| CDY63294 | Canola | nucleus | 49.19 | 49.46 |
| CDX85083 | Canola | plastid | 52.97 | 49.25 |
| CDX77531 | Canola | plastid | 52.97 | 49.25 |
| CDY05593 | Canola | nucleus, plastid | 50.81 | 49.21 |
| CDY61050 | Canola | nucleus | 48.65 | 49.18 |
| CDY32977 | Canola | nucleus, plastid | 48.65 | 49.18 |
| CDY57024 | Canola | nucleus, plastid | 50.81 | 48.96 |
| CDY21126 | Canola | nucleus, plastid | 49.73 | 48.42 |
| CDY30000 | Canola | nucleus, plastid | 49.73 | 48.42 |
| CDY06675 | Canola | nucleus, plastid | 50.81 | 47.47 |
| CDY10247 | Canola | nucleus, plastid | 50.81 | 47.47 |
| CDY52287 | Canola | nucleus | 50.27 | 46.97 |
| CDY59064 | Canola | nucleus | 50.27 | 46.97 |
| CDY09940 | Canola | nucleus | 50.27 | 46.97 |
| CDY20312 | Canola | nucleus | 50.27 | 46.97 |
| CDX94980 | Canola | nucleus | 50.27 | 46.97 |
| CDY49331 | Canola | nucleus, plastid | 49.73 | 46.94 |
| CDY42932 | Canola | nucleus, plastid | 49.73 | 46.7 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 43.78 | 43.32 |
| CDY24755 | Canola | nucleus, plastid | 50.27 | 43.26 |
| CDY10790 | Canola | nucleus | 50.27 | 43.26 |
| CDY57088 | Canola | nucleus | 50.27 | 42.86 |
| CDY15426 | Canola | nucleus | 50.27 | 42.86 |
| CDY57087 | Canola | nucleus | 50.27 | 42.86 |
Protein Annotations
| EnsemblPlants:CDX88480 | EnsemblPlantsGene:GSBRNA2T00148027001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF37 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDX88480 | ProteinID:CDX88480.1 | SEG:seg | UniParc:UPI0004EEAC25 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC06g39240D
Coordinates
chrLK031855:-:1227523..1228080
Molecular Weight (calculated)
20419.2 Da
IEP (calculated)
10.468
GRAVY (calculated)
-0.862
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPSNKGKG IAEGSSSQPQ PQQPQSPPNL PALSRYESQK RRDWNTFCQY LRNQHPPVHI SQCGSNHILD FLQYLDQFGK TKVHVHGCVF FGQVEPAGQC
101: NCPLKQAWGS LDALIGRLRA AYEENGGLPE RNPFAGGGIR VFLREVRDSQ AKARGVPYKK RKKKKRNPMK SGDGTTGTSS SNLPS
101: NCPLKQAWGS LDALIGRLRA AYEENGGLPE RNPFAGGGIR VFLREVRDSQ AKARGVPYKK RKKKKRNPMK SGDGTTGTSS SNLPS
001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
Arabidopsis Description
LSH7Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVA0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.