Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- mitochondrion 1
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28490.1 | CDX84366 | AT5G62920.1 | 18642946 |
| AT5G28490.1 | CDY00336 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86199 | Canola | plastid | 96.84 | 95.83 |
| CDY57024 | Canola | nucleus, plastid | 94.21 | 93.23 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 93.16 | 93.16 |
| CDY64755 | Canola | nucleus, plastid | 93.68 | 92.71 |
| CDY05593 | Canola | nucleus, plastid | 91.58 | 91.1 |
| CDY52505 | Canola | nucleus, plastid | 91.05 | 90.58 |
| CDY42932 | Canola | nucleus, plastid | 80.0 | 77.16 |
| CDY49331 | Canola | nucleus, plastid | 79.47 | 77.04 |
| CDX74186 | Canola | nucleus, plastid | 75.26 | 75.26 |
| GSMUA_Achr11P... | Banana | nucleus | 36.84 | 74.47 |
| CDY21126 | Canola | nucleus, plastid | 73.68 | 73.68 |
| CDY63294 | Canola | nucleus | 71.05 | 73.37 |
| CDY30000 | Canola | nucleus, plastid | 72.63 | 72.63 |
| KRH34151 | Soybean | plastid | 65.26 | 70.45 |
| Zm00001d025863_P001 | Maize | nucleus | 61.05 | 69.05 |
| KRG97044 | Soybean | plastid | 64.21 | 66.67 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 66.84 | 66.49 |
| KRG92633 | Soybean | nucleus | 65.26 | 65.26 |
| KRH68792 | Soybean | plastid | 62.11 | 64.13 |
| CDY35523 | Canola | plastid | 64.74 | 63.08 |
| CDY69731 | Canola | plastid | 64.74 | 63.08 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 54.21 | 62.42 |
| CDX77531 | Canola | plastid | 64.74 | 61.81 |
| CDX85083 | Canola | plastid | 64.74 | 61.81 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 67.37 | 61.24 |
| CDY02038 | Canola | cytosol | 52.11 | 60.37 |
| Solyc05g055020.2.1 | Tomato | nucleus | 66.84 | 60.19 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 56.84 | 60.0 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 54.21 | 59.88 |
| EES11114 | Sorghum | nucleus | 62.11 | 59.3 |
| Zm00001d003057_P001 | Maize | nucleus | 62.11 | 59.0 |
| PGSC0003DMT400029945 | Potato | nucleus | 56.32 | 58.47 |
| Os10t0478000-01 | Rice | nucleus | 62.63 | 58.33 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 61.05 | 58.29 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 61.05 | 58.0 |
| Os04t0516200-01 | Rice | nucleus | 61.58 | 57.92 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 61.05 | 57.71 |
| CDY32697 | Canola | nucleus | 53.68 | 57.63 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 61.05 | 57.43 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 61.05 | 57.43 |
| Zm00001d051143_P001 | Maize | nucleus | 61.05 | 57.43 |
| Zm00001d017263_P001 | Maize | nucleus | 61.58 | 57.35 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 52.11 | 57.23 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 60.53 | 57.21 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 60.53 | 57.21 |
| KXG30661 | Sorghum | nucleus | 62.63 | 57.21 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 61.05 | 56.86 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 51.58 | 56.65 |
| Os02t0623400-00 | Rice | nucleus | 62.11 | 56.46 |
| CDY59510 | Canola | nucleus | 53.68 | 56.35 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 61.05 | 56.31 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 61.05 | 56.31 |
| CDY10790 | Canola | nucleus | 63.68 | 56.28 |
| CDY47983 | Canola | nucleus | 52.11 | 56.25 |
| Zm00001d014032_P001 | Maize | nucleus | 62.11 | 56.19 |
| CDY55387 | Canola | nucleus | 52.63 | 56.18 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 48.42 | 56.1 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 51.58 | 56.0 |
| CDY14848 | Canola | nucleus | 52.11 | 55.93 |
| CDY24755 | Canola | nucleus, plastid | 63.16 | 55.81 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 50.53 | 55.81 |
| CDY57087 | Canola | nucleus | 63.68 | 55.76 |
| CDY57088 | Canola | nucleus | 63.68 | 55.76 |
| Zm00001d032696_P001 | Maize | nucleus | 62.11 | 55.4 |
| CDY15426 | Canola | nucleus | 63.16 | 55.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.74 | 55.19 |
| CDY06675 | Canola | nucleus, plastid | 56.32 | 54.04 |
| CDY10247 | Canola | nucleus, plastid | 56.32 | 54.04 |
| CDY32977 | Canola | nucleus, plastid | 51.58 | 53.55 |
| CDY61050 | Canola | nucleus | 51.58 | 53.55 |
| CDY59064 | Canola | nucleus | 55.79 | 53.54 |
| CDX77619 | Canola | cytosol | 27.37 | 53.06 |
| CDX94980 | Canola | nucleus | 55.26 | 53.03 |
| CDY09940 | Canola | nucleus | 55.26 | 53.03 |
| CDY20312 | Canola | nucleus | 55.26 | 53.03 |
| CDY52287 | Canola | nucleus | 55.26 | 53.03 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 51.05 | 53.01 |
| KXG38327 | Sorghum | nucleus | 62.11 | 52.91 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 44.21 | 52.17 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 61.58 | 51.54 |
| CDX88480 | Canola | nucleus | 50.0 | 51.35 |
| CDY06030 | Canola | nucleus | 47.89 | 50.28 |
| CDX87432 | Canola | nucleus | 50.0 | 50.0 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 48.95 | 49.73 |
| CDX87760 | Canola | nucleus | 46.84 | 49.44 |
| CDY14588 | Canola | nucleus | 48.95 | 48.95 |
| CDY01557 | Canola | nucleus | 48.95 | 48.69 |
| CDY26881 | Canola | nucleus | 48.95 | 48.69 |
| CDX76510 | Canola | nucleus | 48.95 | 48.19 |
| CDY67351 | Canola | nucleus | 48.95 | 48.19 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 61.05 | 48.13 |
| Zm00001d051966_P001 | Maize | nucleus | 62.11 | 47.97 |
| CDY34056 | Canola | nucleus | 48.42 | 47.67 |
| CDX78877 | Canola | nucleus | 48.95 | 47.45 |
| Zm00001d018433_P001 | Maize | nucleus | 61.58 | 47.37 |
| Os02t0811000-01 | Rice | nucleus | 61.58 | 47.18 |
| EES05986 | Sorghum | nucleus | 62.11 | 47.01 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 62.11 | 46.83 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 62.11 | 46.83 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 62.11 | 46.83 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 61.05 | 45.31 |
Protein Annotations
| EnsemblPlants:CDY52479 | EnsemblPlantsGene:GSBRNA2T00007149001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY52479 | ProteinID:CDY52479.1 | SEG:seg | UniParc:UPI0004EE7E78 |
| UniProt:A0A078ISQ1 | MapMan:35.1 | : | : | : | : |
Description
BnaC07g49400DBnaC07g49400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ISQ1]
Coordinates
chrLK033095:+:29519..30091
Molecular Weight (calculated)
21533.7 Da
IEP (calculated)
10.486
GRAVY (calculated)
-0.805
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MELISHQGNK NPITSTQLTP PSPSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LYLREVRDFQ AKARGVSYEK KRKRVNRQKT LSQTQPPLPL QQPQPQQGQS VMANYSGAIV
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LYLREVRDFQ AKARGVSYEK KRKRVNRQKT LSQTQPPLPL QQPQPQQGQS VMANYSGAIV
001: MDLISHQPNK NPNSSTQLTP PSSSRYENQK RRDWNTFCQY LRNHRPPLSL PSCSGAHVLE FLRYLDQFGK TKVHHQNCAF FGLPNPPAPC PCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
101: LDALIGRLRA AYEENGGPPE ANPFGSRAVR LFLREVRDFQ AKARGVSYEK KRKRVNRQKP QTQPPLQLQQ QQQQPQQGQS MMANYSGATV
Arabidopsis Description
LSH1Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNI3]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.