Factsheet for HORVU6Hr1G088790.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G361900.1	Wheat	nucleus	97.27	98.81
TraesCS6B01G414700.1	Wheat	nucleus	96.88	98.41
TraesCS6A01G377300.1	Wheat	nucleus	96.88	98.41
Zm00001d018433_P001	Maize	nucleus	86.33	89.47
EES05986	Sorghum	nucleus	87.5	89.24
Os02t0811000-01	Rice	nucleus	84.77	87.5
Zm00001d051966_P001	Maize	nucleus	83.98	87.4
GSMUA_Achr11P...	Banana	nucleus	28.91	78.72
Bra023738.1-P	Field mustard	plastid	50.39	73.3
Solyc09g025280.1.1	Tomato	nucleus	48.83	73.1
VIT_07s0005g03530.t01	Wine grape	nucleus	50.39	70.49
PGSC0003DMT400026698	Potato	nucleus	50.0	69.19
CDY69731	Canola	plastid	52.34	68.72
CDY35523	Canola	plastid	52.34	68.72
HORVU2Hr1G089190.1	Barley	nucleus	52.73	67.84
AT3G23290.2	Thale cress	plastid	51.56	67.69
KRH34151	Soybean	plastid	46.48	67.61
KRG92413	Soybean	nucleus	50.39	67.19
HORVU6Hr1G058340.2	Barley	nucleus	53.52	67.16
GSMUA_Achr5P18640_001	Banana	nucleus	44.92	66.86
Bra014935.1-P	Field mustard	plastid	51.56	66.33
CDX77531	Canola	plastid	51.56	66.33
CDX85083	Canola	plastid	51.56	66.33
VIT_05s0049g01170.t01	Wine grape	nucleus	51.95	66.17
GSMUA_Achr5P03870_001	Banana	nucleus	44.14	65.32
KRH67397	Soybean	nucleus	51.56	65.02
KRG95674	Soybean	nucleus	51.56	65.02
PGSC0003DMT400044213	Potato	mitochondrion	51.17	64.53
KRH32192	Soybean	nucleus	51.95	64.25
KRG92633	Soybean	nucleus	47.66	64.21
GSMUA_Achr5P14570_001	Banana	nucleus	43.36	64.16
KRH34391	Soybean	nucleus	50.39	63.86
Solyc09g090180.1.1	Tomato	plastid	51.56	63.46
KRH56293	Soybean	nucleus	51.56	62.56
KRG97044	Soybean	plastid	44.53	62.3
VIT_14s0036g00540.t01	Wine grape	plastid	46.09	61.78
GSMUA_Achr4P21940_001	Banana	nucleus	42.19	61.71
AT5G28490.1	Thale cress	nucleus, plastid	45.7	61.58
CDY52479	Canola	nucleus, plastid	45.31	61.05
CDY10790	Canola	nucleus	51.17	60.93
Bra018263.1-P	Field mustard	nucleus	51.17	60.93
PGSC0003DMT400051692	Potato	nucleus	49.22	60.58
Solyc06g083860.2.1	Tomato	nucleus	51.56	60.55
CDY24755	Canola	nucleus, plastid	50.78	60.47
CDY57024	Canola	nucleus, plastid	45.31	60.42
CDX86199	Canola	plastid	45.31	60.42
CDY15426	Canola	nucleus	51.17	60.37
Bra021707.1-P	Field mustard	nucleus	51.17	60.37
CDY57087	Canola	nucleus	51.17	60.37
CDY57088	Canola	nucleus	51.17	60.37
KRH68792	Soybean	plastid	43.36	60.33
GSMUA_Achr4P28760_001	Banana	nucleus	42.97	60.11
HORVU1Hr1G041240.5	Barley	nucleus	53.12	59.91
Bra036134.1-P	Field mustard	nucleus, plastid	44.92	59.9
AT2G31160.1	Thale cress	nucleus	51.17	59.82
CDY05593	Canola	nucleus, plastid	44.53	59.69
CDY52505	Canola	nucleus, plastid	44.53	59.69
CDY64755	Canola	nucleus, plastid	44.53	59.38
Bra009997.1-P	Field mustard	plastid	44.53	59.38
Bra020610.1-P	Field mustard	nucleus, plastid	44.14	59.16
PGSC0003DMT400029945	Potato	nucleus	41.41	57.92
CDY30000	Canola	nucleus, plastid	42.97	57.89
CDY21126	Canola	nucleus, plastid	42.97	57.89
Solyc04g009980.2.1	Tomato	nucleus, plastid	40.62	57.78
CDX74186	Canola	nucleus, plastid	42.19	56.84
Bra001109.1-P	Field mustard	nucleus, plastid	42.19	56.84
CDY63294	Canola	nucleus	40.62	56.52
AT3G04510.1	Thale cress	nucleus, plastid	43.75	55.72
CDY49331	Canola	nucleus, plastid	42.58	55.61
CDY42932	Canola	nucleus, plastid	42.58	55.33
Bra040188.1-P	Field mustard	nucleus, plastid	42.19	54.82
PGSC0003DMT400060169	Potato	nucleus, plastid	44.53	54.55
Solyc05g055020.2.1	Tomato	nucleus	44.92	54.5
HORVU1Hr1G070480.1	Barley	nucleus	48.83	53.88
HORVU3Hr1G088000.2	Barley	plastid	45.7	51.09
HORVU7Hr1G106960.2	Barley	nucleus	50.0	47.58
HORVU1Hr1G060250.1	Barley	nucleus	49.22	44.06
HORVU2Hr1G060890.2	Barley	nucleus, plastid	41.41	40.77
Bra040137.1-P	Field mustard	nucleus, plastid	42.97	37.04

Protein Annotations

EnsemblPlants:HORVU6Hr1G088790.1	EnsemblPlantsGene:HORVU6Hr1G088790	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165	PANTHER:PTHR31165:SF7
PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI000B47B4AF	UniProt:A0A287V427	MapMan:35.1

Description

No Description!

Coordinates

chrchr6H:-:567405168..567407091

Molecular Weight (calculated)

26410.6 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.665

Length

256 amino acids

Sequence
(BLAST)

001: MDHHHHHHHH HHHMIPGQEP SAGDGAPQDN FFLGPAGVGI FGGVGGASGA GSSSSGAAGG SGTSAGGGGG GGAGGGPSPS GSSPSLSRYE SQKRRDWNTF
101: GQYLRNHRPP LSLSRCSGAH VLEFLKYMDQ FGKTKVHTAV CPFYGHPNPP APCPCPLRQA WGSLDALIGR LRAAYEENGG TPEMNPFGAR AVRLYLREVR
201: ETQARARGIS YEKKKRKKPS SSTSAAAGPS SEGSPTAGPS GSGGGDTSAS PHFIMP

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.