Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G342800.1 | Wheat | cytosol, nucleus, plastid | 82.53 | 89.15 |
| TraesCS3A01G348900.1 | Wheat | golgi | 81.22 | 87.74 |
| TraesCS3B01G381000.1 | Wheat | cytosol, nucleus, plastid | 81.22 | 87.74 |
| Zm00001d043011_P001 | Maize | nucleus | 64.19 | 70.33 |
| Os01t0828900-00 | Rice | nucleus, plastid | 62.45 | 67.45 |
| OQU87784 | Sorghum | nucleus | 62.88 | 66.98 |
| Zm00001d012473_P001 | Maize | nucleus | 57.64 | 63.46 |
| HORVU1Hr1G070480.1 | Barley | nucleus | 63.76 | 62.93 |
| GSMUA_Achr11P... | Banana | nucleus | 46.72 | 60.8 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.6 | 58.6 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 49.78 | 57.29 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 48.47 | 54.41 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 47.6 | 52.66 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 62.88 | 50.35 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 49.78 | 50.22 |
| GSMUA_Achr11P... | Banana | nucleus | 42.36 | 47.78 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 51.09 | 45.7 |
| HORVU7Hr1G106960.2 | Barley | nucleus | 49.78 | 42.38 |
| HORVU2Hr1G060890.2 | Barley | nucleus, plastid | 43.67 | 38.46 |
| Zm00001d036993_P001 | Maize | mitochondrion | 20.52 | 27.17 |
| Zm00001d020559_P001 | Maize | mitochondrion | 9.17 | 10.24 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G088000.2 | EnsemblPlantsGene:HORVU3Hr1G088000 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF18 |
| PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000B46C807 | UniProt:A0A287M4S4 | MapMan:35.1 |
Description
No Description!
Coordinates
chrchr3H:-:623227724..623228677
Molecular Weight (calculated)
24524.0 Da
IEP (calculated)
10.665
GRAVY (calculated)
-0.505
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: SRAPPLHFSS NTFTSPLGSP SLSPLLRAHI PFQRPISIHP KPPAQLSRYE SQKRRDWNTF LQYLRNHKPP LTLARCSGAH VIEFLRYLDQ FGKTKVHAVG
101: CAYYGQPSPP GPCPCPLRQA WGSLDALIGR LRAAYEESGG APESNPFAAR AVRIYLREVR DSHAKARGIP HEKKKRKRAP QAAEASGSSA GTAAVFGRDV
201: EGSAGDGALA ASAAQAGARD GGSTAPSIP
101: CAYYGQPSPP GPCPCPLRQA WGSLDALIGR LRAAYEESGG APESNPFAAR AVRIYLREVR DSHAKARGIP HEKKKRKRAP QAAEASGSSA GTAAVFGRDV
201: EGSAGDGALA ASAAQAGARD GGSTAPSIP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.