Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | nucleus | 74.88 | 83.33 |
| GSMUA_Achr11P... | Banana | nucleus | 68.12 | 80.11 |
| GSMUA_Achr11P... | Banana | nucleus | 61.84 | 63.05 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 59.42 | 58.02 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.89 | 54.91 |
| GSMUA_Achr11P... | Banana | nucleus | 51.69 | 53.77 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 43.96 | 52.91 |
| Os01t0828900-00 | Rice | nucleus, plastid | 54.11 | 52.83 |
| Zm00001d043011_P001 | Maize | nucleus | 53.14 | 52.63 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 43.48 | 52.02 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 43.96 | 52.0 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 43.0 | 51.74 |
| OQU87784 | Sorghum | nucleus | 53.62 | 51.63 |
| TraesCS3B01G381000.1 | Wheat | cytosol, nucleus, plastid | 52.66 | 51.42 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 45.89 | 51.35 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 46.38 | 51.06 |
| GSMUA_Achr11P... | Banana | nucleus | 23.19 | 51.06 |
| Zm00001d012473_P001 | Maize | nucleus | 51.21 | 50.96 |
| TraesCS3D01G342800.1 | Wheat | cytosol, nucleus, plastid | 52.17 | 50.94 |
| TraesCS3A01G348900.1 | Wheat | golgi | 52.17 | 50.94 |
| GSMUA_AchrUn_... | Banana | nucleus | 50.24 | 50.0 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 48.79 | 49.51 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 51.69 | 49.31 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 38.65 | 48.78 |
| GSMUA_AchrUn_... | Banana | nucleus | 36.23 | 48.7 |
| GSMUA_Achr6P08720_001 | Banana | nucleus | 45.89 | 48.22 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 46.86 | 47.78 |
| GSMUA_Achr11P... | Banana | nucleus | 51.21 | 47.75 |
| HORVU3Hr1G088000.2 | Barley | plastid | 52.66 | 47.6 |
| GSMUA_Achr7P18300_001 | Banana | nucleus | 46.86 | 47.09 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 41.55 | 46.99 |
| HORVU1Hr1G070480.1 | Barley | nucleus | 51.69 | 46.12 |
| GSMUA_Achr10P... | Banana | nucleus | 44.93 | 45.59 |
| TraesCS1D01G294600.2 | Wheat | nucleus, plastid | 51.21 | 45.49 |
| TraesCS1B01G305800.1 | Wheat | nucleus | 51.69 | 44.96 |
| Os05t0472000-00 | Rice | nucleus | 51.69 | 44.96 |
| Zm00001d010596_P001 | Maize | nucleus | 52.66 | 44.13 |
| Zm00001d038442_P001 | Maize | nucleus | 52.66 | 44.13 |
| TraesCS1A01G296900.1 | Wheat | nucleus, plastid | 51.21 | 43.44 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 32.85 | 42.24 |
| EES18364 | Sorghum | nucleus | 52.17 | 42.02 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 49.76 | 38.43 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 49.28 | 35.92 |
| Zm00001d036993_P001 | Maize | mitochondrion | 19.32 | 23.12 |
| Zm00001d020559_P001 | Maize | mitochondrion | 6.76 | 6.83 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P22390_001 | EnsemblPlants:GSMUA_Achr7T22390_001 | EnsemblPlantsGene:GSMUA_Achr7G22390_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF6 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | SignalP:SignalP-noTM | UniParc:UPI0002963093 |
| UniProt:M0TJS5 | MapMan:35.1 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G22390_001]
Coordinates
chr7:-:24883354..24884137
Molecular Weight (calculated)
22274.1 Da
IEP (calculated)
10.524
GRAVY (calculated)
-0.700
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFQNHISSL SLSLLRSVVF SHFTLSKVQS EREREGGEET TGGLGDAGPP RAATTPSRYE SQKRRDWNTF LQYLRNHKPP LALARCSGAH VIEFLRYLDQ
101: FGKTKAWGSL DALIGRLRAA YEESGGTPET NPFAARAVRI YLRDVRESQA KARGIPYEKK KRKRAPPAAG QPHPAGESSS STALSGGSCG SGAGEGSGPP
201: PRGSSSS
101: FGKTKAWGSL DALIGRLRAA YEESGGTPET NPFAARAVRI YLRDVRESQA KARGIPYEKK KRKRAPPAAG QPHPAGESSS STALSGGSCG SGAGEGSGPP
201: PRGSSSS
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.