Factsheet for GSMUA_AchrUn_randomP21730_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P09270_001	Banana	nucleus	83.77	75.0
GSMUA_Achr5P18640_001	Banana	nucleus	64.94	58.14
GSMUA_Achr5P03870_001	Banana	nucleus	62.99	56.07
GSMUA_Achr4P21940_001	Banana	nucleus	62.99	55.43
GSMUA_Achr5P14570_001	Banana	nucleus	61.04	54.34
GSMUA_Achr4P28760_001	Banana	nucleus	64.29	54.1
GSMUA_Achr1P05650_001	Banana	nucleus	57.14	53.66
GSMUA_Achr6P36540_001	Banana	nucleus	53.25	50.93
VIT_07s0005g03530.t01	Wine grape	nucleus	59.09	49.73
Bra023738.1-P	Field mustard	plastid	56.49	49.43
KRG92413	Soybean	nucleus	61.04	48.96
GSMUA_Achr11P...	Banana	nucleus	29.87	48.94
Solyc09g025280.1.1	Tomato	nucleus	53.25	47.95
KRH34151	Soybean	plastid	53.9	47.16
KRH34391	Soybean	nucleus	61.69	47.03
GSMUA_Achr9P30540_001	Banana	nucleus	56.49	47.03
AT3G23290.2	Thale cress	plastid	59.09	46.67
VIT_14s0036g00540.t01	Wine grape	plastid	57.79	46.6
PGSC0003DMT400026698	Potato	nucleus	55.84	46.49
VIT_05s0049g01170.t01	Wine grape	nucleus	60.39	46.27
CDY35523	Canola	plastid	58.44	46.15
CDY69731	Canola	plastid	58.44	46.15
KRH32192	Soybean	nucleus	61.04	45.41
Bra014935.1-P	Field mustard	plastid	58.44	45.23
CDX77531	Canola	plastid	58.44	45.23
CDX85083	Canola	plastid	58.44	45.23
KRH67397	Soybean	nucleus	59.09	44.83
KRG95674	Soybean	nucleus	59.09	44.83
CDX86199	Canola	plastid	55.84	44.79
CDY52479	Canola	nucleus, plastid	55.19	44.74
AT5G28490.1	Thale cress	nucleus, plastid	54.55	44.21
KRG92633	Soybean	nucleus	54.55	44.21
KRH56293	Soybean	nucleus	60.39	44.08
CDY05593	Canola	nucleus, plastid	54.55	43.98
CDY52505	Canola	nucleus, plastid	54.55	43.98
CDY15426	Canola	nucleus	61.69	43.78
CDY64755	Canola	nucleus, plastid	54.55	43.75
Bra009997.1-P	Field mustard	plastid	54.55	43.75
CDY57024	Canola	nucleus, plastid	54.55	43.75
GSMUA_Achr5P00260_001	Banana	nucleus	57.79	43.63
GSMUA_Achr4P31900_001	Banana	nucleus	53.25	43.62
Bra020610.1-P	Field mustard	nucleus, plastid	53.9	43.46
PGSC0003DMT400044213	Potato	mitochondrion	57.14	43.35
CDY57088	Canola	nucleus	61.04	43.32
CDY57087	Canola	nucleus	61.04	43.32
Bra036134.1-P	Field mustard	nucleus, plastid	53.9	43.23
CDX74186	Canola	nucleus, plastid	53.25	43.16
Bra001109.1-P	Field mustard	nucleus, plastid	53.25	43.16
AT2G31160.1	Thale cress	nucleus	61.04	42.92
Bra021707.1-P	Field mustard	nucleus	60.39	42.86
CDY10790	Canola	nucleus	59.74	42.79
Bra018263.1-P	Field mustard	nucleus	59.74	42.79
Solyc09g090180.1.1	Tomato	plastid	57.79	42.79
PGSC0003DMT400051692	Potato	nucleus	57.79	42.79
CDY21126	Canola	nucleus, plastid	52.6	42.63
GSMUA_Achr11P...	Banana	nucleus	48.7	42.61
CDY24755	Canola	nucleus, plastid	59.09	42.33
CDY30000	Canola	nucleus, plastid	51.95	42.11
CDY63294	Canola	nucleus	50.0	41.85
Solyc06g083860.2.1	Tomato	nucleus	59.09	41.74
KRG97044	Soybean	plastid	49.35	41.53
GSMUA_AchrUn_...	Banana	nucleus	55.84	41.35
GSMUA_AchrUn_...	Banana	nucleus	49.35	40.86
GSMUA_Achr11P...	Banana	nucleus	52.6	40.7
Bra040188.1-P	Field mustard	nucleus, plastid	51.95	40.61
CDY49331	Canola	nucleus, plastid	51.3	40.31
AT3G04510.1	Thale cress	nucleus, plastid	52.6	40.3
CDY42932	Canola	nucleus, plastid	51.3	40.1
GSMUA_Achr11P...	Banana	nucleus	57.79	40.09
KRH68792	Soybean	plastid	46.75	39.13
GSMUA_Achr6P08720_001	Banana	nucleus	49.35	38.58
GSMUA_Achr8P01890_001	Banana	nucleus	50.0	37.93
PGSC0003DMT400029945	Potato	nucleus	44.81	37.7
GSMUA_Achr10P...	Banana	nucleus	49.35	37.25
Solyc04g009980.2.1	Tomato	nucleus, plastid	43.51	37.22
GSMUA_Achr7P22390_001	Banana	endoplasmic reticulum, nucleus	48.7	36.23
GSMUA_Achr5P07420_001	Banana	nucleus	49.35	35.85
GSMUA_Achr3P10070_001	Banana	nucleus	50.0	35.48
PGSC0003DMT400060169	Potato	nucleus, plastid	48.05	35.41
Solyc05g055020.2.1	Tomato	nucleus	48.05	35.07
GSMUA_Achr7P18300_001	Banana	nucleus	46.75	34.95
GSMUA_Achr11P...	Banana	nucleus	44.81	33.99
GSMUA_Achr5P29450_001	Banana	cytosol, nucleus, plastid	51.95	29.85
Bra040137.1-P	Field mustard	nucleus, plastid	52.6	27.27
GSMUA_Achr9P18050_001	Banana	nucleus	48.7	26.41

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP21730_001	EnsemblPlants:GSMUA_AchrUn_randomT21730_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG21730_001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165
PANTHER:PTHR31165:SF38	PFAM:PF04852	PFscan:PS51697	SEG:seg	UniParc:UPI00029633BE	UniProt:M0UB81
MapMan:35.1	:	:	:	:	:

Description

Putative uncharacterized protein Sb06g022610 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG21730_001]

Coordinates

chrchrUn_random:+:106129181..106129768

Molecular Weight (calculated)

16962.2 Da

IEP (calculated)

11.131

GRAVY (calculated)

-1.003

Length

154 amino acids

Sequence
(BLAST)

001: MAMMPNPESP PPDGLPTSPS TPPAAAATSS SSSPSRSLSR YESQKRRDWN TFGQYLRNHR PPLSLGRCSG AHVLEFLRYL DQFGKTKENG GKPEANPFGA
101: RAVRLYLREI REMQAKARGV SYEKKKRKKP PQVPQPQPRP PHTLSPSPAT GAAT

Best Arabidopsis Sequence Match ( AT1G07090.1 )
(BLAST)

001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP

Arabidopsis Description

LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.