CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014935.1-P	Field mustard	plastid	99.5	99.5
CDX77531	Canola	plastid	99.5	99.5
CDY35523	Canola	plastid	90.95	92.82
CDY69731	Canola	plastid	90.45	92.31
GSMUA_Achr11P...	Banana	nucleus	37.19	78.72
Zm00001d025863_P001	Maize	nucleus	59.3	70.24
PGSC0003DMT400044213	Potato	mitochondrion	71.36	69.95
Solyc09g090180.1.1	Tomato	plastid	70.85	67.79
CDY52479	Canola	nucleus, plastid	61.81	64.74
CDY10790	Canola	nucleus	69.85	64.65
CDY32697	Canola	nucleus	57.29	64.41
CDY10712	Canola	cytosol, nucleus, plastid	53.27	64.24
CDY24755	Canola	nucleus, plastid	69.35	64.19
CDY57024	Canola	nucleus, plastid	61.81	64.06
TraesCS6B01G256500.1	Wheat	nucleus	64.32	64.0
EES11114	Sorghum	nucleus	63.82	63.82
HORVU2Hr1G089190.1	Barley	nucleus	63.82	63.82
TraesCS2D01G378900.1	Wheat	nucleus	64.32	63.68
CDY57087	Canola	nucleus	69.35	63.59
CDY57088	Canola	nucleus	69.35	63.59
CDY15426	Canola	nucleus	69.35	63.59
CDY64755	Canola	nucleus, plastid	61.31	63.54
Zm00001d003057_P001	Maize	nucleus	63.82	63.5
CDY02038	Canola	cytosol	52.26	63.41
TraesCS6A01G225000.1	Wheat	nucleus	64.32	63.37
TraesCS6D01G209700.1	Wheat	nucleus	64.32	63.37
CDY52505	Canola	nucleus, plastid	60.8	63.35
CDY05593	Canola	nucleus, plastid	60.8	63.35
TraesCS2B01G399800.1	Wheat	nucleus	63.82	63.18
TraesCS2A01G382500.1	Wheat	nucleus	63.82	63.18
CDX86199	Canola	plastid	60.8	63.02
CDY59510	Canola	nucleus	57.29	62.98
Os04t0516200-01	Rice	nucleus	63.82	62.87
GSMUA_Achr5P18640_001	Banana	nucleus	54.27	62.79
HORVU6Hr1G058340.2	Barley	nucleus	64.32	62.75
Zm00001d017263_P001	Maize	nucleus	64.32	62.75
CDY63294	Canola	nucleus	57.79	62.5
Os10t0478000-01	Rice	nucleus	63.82	62.25
CDX74186	Canola	nucleus, plastid	59.3	62.11
GSMUA_Achr1P09270_001	Banana	nucleus	53.27	61.63
KXG30661	Sorghum	nucleus	64.32	61.54
GSMUA_Achr5P03870_001	Banana	nucleus	53.27	61.27
CDY21126	Canola	nucleus, plastid	58.29	61.05
CDY49331	Canola	nucleus, plastid	59.8	60.71
GSMUA_Achr5P14570_001	Banana	nucleus	52.76	60.69
TraesCS1D01G153700.1	Wheat	nucleus	62.81	60.68
TraesCS1B01G172100.1	Wheat	nucleus	62.81	60.68
CDY61050	Canola	nucleus	55.78	60.66
CDY30000	Canola	nucleus, plastid	57.79	60.53
Zm00001d014032_P001	Maize	nucleus	63.82	60.48
CDY42932	Canola	nucleus, plastid	59.8	60.41
Zm00001d051143_P001	Maize	nucleus	61.31	60.4
Os02t0623400-00	Rice	nucleus	62.81	59.81
CDY47983	Canola	nucleus	52.76	59.66
Zm00001d032696_P001	Maize	nucleus	63.82	59.62
CDY32977	Canola	nucleus, plastid	54.77	59.56
CDY14848	Canola	nucleus	52.76	59.32
CDY55387	Canola	nucleus	52.76	58.99
GSMUA_Achr4P21940_001	Banana	nucleus	51.76	58.86
GSMUA_Achr1P05650_001	Banana	nucleus	48.24	58.54
GSMUA_AchrUn_...	Banana	nucleus	45.23	58.44
GSMUA_Achr4P28760_001	Banana	nucleus	52.76	57.38
KXG38327	Sorghum	nucleus	63.82	56.95
CDY06675	Canola	nucleus, plastid	56.28	56.57
CDY10247	Canola	nucleus, plastid	56.28	56.57
HORVU1Hr1G041240.5	Barley	nucleus	63.82	55.95
Zm00001d018433_P001	Maize	nucleus	69.35	55.87
Zm00001d051966_P001	Maize	nucleus	68.84	55.69
CDY52287	Canola	nucleus	55.28	55.56
CDX94980	Canola	nucleus	55.28	55.56
CDY20312	Canola	nucleus	55.28	55.56
CDY09940	Canola	nucleus	55.28	55.56
Os02t0811000-01	Rice	nucleus	68.84	55.24
CDY59064	Canola	nucleus	54.77	55.05
EES05986	Sorghum	nucleus	69.35	54.98
GSMUA_Achr6P36540_001	Banana	nucleus	44.22	54.66
CDY06030	Canola	nucleus	49.25	54.14
CDX87760	Canola	nucleus	48.74	53.89
TraesCS6A01G377300.1	Wheat	nucleus	67.34	53.17
TraesCS6B01G414700.1	Wheat	nucleus	67.34	53.17
TraesCS6D01G361900.1	Wheat	nucleus	67.34	53.17
CDX88480	Canola	nucleus	49.25	52.97
CDY01557	Canola	nucleus	50.75	52.88
CDX76510	Canola	nucleus	50.75	52.33
CDY67351	Canola	nucleus	50.75	52.33
CDX77619	Canola	cytosol	25.63	52.04
TraesCS1A01G154900.1	Wheat	nucleus	62.81	51.87
CDY34056	Canola	nucleus	50.25	51.81
CDX87432	Canola	nucleus	49.25	51.58
HORVU6Hr1G088790.1	Barley	nucleus	66.33	51.56
CDX78877	Canola	nucleus	50.75	51.53
CDY32978	Canola	cytosol, nucleus, plastid	47.24	50.27
CDY14588	Canola	nucleus	47.74	50.0
CDY26881	Canola	nucleus	47.74	49.74

Protein Annotations

EnsemblPlants:CDX85083	EnsemblPlantsGene:GSBRNA2T00142552001	InterPro:ALOG_dom	InterPro:IPR006936	PANTHER:PTHR31165	PANTHER:PTHR31165:SF38
PFAM:PF04852	PFscan:PS51697	ProteinID:CDX85083	ProteinID:CDX85083.1	SEG:seg	UniParc:UPI0002A9DA94
MapMan:35.1	:	:	:	:	:

Description

BnaC07g08230D

Coordinates

chrLK031840:+:236399..237742

Molecular Weight (calculated)

22028.1 Da

IEP (calculated)

10.733

GRAVY (calculated)

-0.675

Length

199 amino acids

Sequence
(BLAST)

001: MDPIHGFMST SNISHNTNLM IAAAAATTTT TSSSSSSSGG SATNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHMQI
101: CPFFGHPNPP APCTCPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP QAPLPPPHQP VISNSPNLQ

Best Arabidopsis Sequence Match ( AT3G23290.2 )
(BLAST)

001: MDHIIGFMGT TNMSHNTNLM IAAAATTTTT SSSSSSSSGG SGTNQLSRYE NQKRRDWNTF GQYLRNHRPP LSLSRCSGAH VLEFLRYLDQ FGKTKVHTHL
101: CPFFGHPNPP APCACPLRQA WGSLDALIGR LRAAFEENGG SPETNPFGAR AVRLYLREVR DSQAKARGIS YEKKKRKRPP PPLPPAQPAI SSSPN

Arabidopsis Description

LSH4LSH4 [Source:UniProtKB/TrEMBL;Acc:A0A178VHD2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.