Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra004711.1-P | Field mustard | nucleus | 93.26 | 99.4 |
| AT2G42610.1 | Thale cress | nucleus | 92.7 | 93.22 |
| CDY47983 | Canola | nucleus | 89.89 | 90.91 |
| CDY14848 | Canola | nucleus | 89.33 | 89.83 |
| VIT_12s0028g02160.t01 | Wine grape | nucleus | 75.84 | 80.84 |
| KRH27046 | Soybean | nucleus | 76.97 | 78.29 |
| PGSC0003DMT400052658 | Potato | nucleus | 75.28 | 77.46 |
| KRH55744 | Soybean | nucleus | 76.97 | 76.54 |
| KRH25774 | Soybean | nucleus | 75.28 | 75.71 |
| KRH22284 | Soybean | nucleus | 66.85 | 74.38 |
| PGSC0003DMT400027334 | Potato | nucleus | 70.22 | 70.22 |
| Solyc10g008000.1.1 | Tomato | nucleus | 70.22 | 70.22 |
| CDY01557 | Canola | nucleus | 63.48 | 59.16 |
| CDY67351 | Canola | nucleus | 64.04 | 59.07 |
| CDX78877 | Canola | nucleus | 64.61 | 58.67 |
| CDX76510 | Canola | nucleus | 62.92 | 58.03 |
| CDX88480 | Canola | nucleus | 60.11 | 57.84 |
| CDX87760 | Canola | nucleus | 58.43 | 57.78 |
| CDY34056 | Canola | nucleus | 62.36 | 57.51 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 52.81 | 56.97 |
| CDY06030 | Canola | nucleus | 57.87 | 56.91 |
| CDY02038 | Canola | cytosol | 51.69 | 56.1 |
| CDY32697 | Canola | nucleus | 55.62 | 55.93 |
| CDX87432 | Canola | nucleus | 59.55 | 55.79 |
| CDX77619 | Canola | cytosol | 30.34 | 55.1 |
| CDY59510 | Canola | nucleus | 55.62 | 54.7 |
| CDY14588 | Canola | nucleus | 57.87 | 54.21 |
| CDY26881 | Canola | nucleus | 57.87 | 53.93 |
| CDY69731 | Canola | plastid | 58.99 | 53.85 |
| CDY61050 | Canola | nucleus | 55.06 | 53.55 |
| CDY35523 | Canola | plastid | 58.43 | 53.33 |
| CDY32977 | Canola | nucleus, plastid | 54.49 | 53.01 |
| CDX85083 | Canola | plastid | 58.99 | 52.76 |
| CDX77531 | Canola | plastid | 58.99 | 52.76 |
| CDY52479 | Canola | nucleus, plastid | 56.18 | 52.63 |
| CDX86199 | Canola | plastid | 56.74 | 52.6 |
| CDY57024 | Canola | nucleus, plastid | 56.18 | 52.08 |
| CDY21126 | Canola | nucleus, plastid | 55.06 | 51.58 |
| CDY30000 | Canola | nucleus, plastid | 54.49 | 51.05 |
| CDY64755 | Canola | nucleus, plastid | 55.06 | 51.04 |
| CDY05593 | Canola | nucleus, plastid | 54.49 | 50.79 |
| CDY52505 | Canola | nucleus, plastid | 54.49 | 50.79 |
| CDY06675 | Canola | nucleus, plastid | 56.18 | 50.51 |
| CDY10247 | Canola | nucleus, plastid | 56.18 | 50.51 |
| CDY63294 | Canola | nucleus | 51.69 | 50.0 |
| CDY59064 | Canola | nucleus | 55.06 | 49.49 |
| CDX74186 | Canola | nucleus, plastid | 52.81 | 49.47 |
| CDY52287 | Canola | nucleus | 54.49 | 48.99 |
| CDY20312 | Canola | nucleus | 54.49 | 48.99 |
| CDY09940 | Canola | nucleus | 54.49 | 48.99 |
| CDX94980 | Canola | nucleus | 54.49 | 48.99 |
| CDY49331 | Canola | nucleus, plastid | 53.93 | 48.98 |
| CDY42932 | Canola | nucleus, plastid | 53.37 | 48.22 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 50.0 | 47.59 |
| CDY24755 | Canola | nucleus, plastid | 57.3 | 47.44 |
| CDY10790 | Canola | nucleus | 57.3 | 47.44 |
| CDY57088 | Canola | nucleus | 57.3 | 47.0 |
| CDY57087 | Canola | nucleus | 57.3 | 47.0 |
| CDY15426 | Canola | nucleus | 57.3 | 47.0 |
Protein Annotations
| EnsemblPlants:CDY55387 | EnsemblPlantsGene:GSBRNA2T00016791001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF10 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY55387 | ProteinID:CDY55387.1 | SEG:seg | UniParc:UPI0004EADD3C |
| UniProt:A0A078J0L4 | MapMan:35.1 | : | : | : | : |
Description
BnaA05g34250DBnaA05g34250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0L4]
Coordinates
chrLK033399:-:2170..2735
Molecular Weight (calculated)
19823.4 Da
IEP (calculated)
9.851
GRAVY (calculated)
-0.867
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPRDRGKS SMESSGSEPP VTPSRYESQK RRDWNTFGQY LRNQRPPLPM SHCNCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGSPE TNPFASGAIR VYLREVRECQ AKARGIPFKK KKKKPTTTEM GGGREDSSSS SASPFGFS
101: LDALIGRLRA AYEENGGSPE TNPFASGAIR VYLREVRECQ AKARGIPFKK KKKKPTTTEM GGGREDSSSS SASPFGFS
001: MSSPRERGKS LMESSGSEPP VTPSRYESQK RRDWNTFGQY LKNQRPPVPM SHCSCNHVLD FLRYLDQFGK TKVHVPGCMF YGQPEPPAPC TCPLRQAWGS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
101: LDALIGRLRA AYEENGGPPE TNPFASGAIR VYLREVRECQ AKARGIPYKK KKKKKPTPEM GGGREDSSSS SSSFSFS
Arabidopsis Description
LSH10LSH10 [Source:UniProtKB/TrEMBL;Acc:A0A178VLX9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.