Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 1
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10247 | Canola | nucleus, plastid | 99.49 | 99.49 |
| Bra015551.1-P | Field mustard | nucleus, plastid | 98.99 | 98.99 |
| AT1G07090.1 | Thale cress | nucleus | 87.88 | 88.78 |
| CDY52287 | Canola | nucleus | 87.37 | 87.37 |
| CDY20312 | Canola | nucleus | 87.37 | 87.37 |
| CDY09940 | Canola | nucleus | 87.37 | 87.37 |
| CDX94980 | Canola | nucleus | 87.37 | 87.37 |
| CDY59064 | Canola | nucleus | 86.87 | 86.87 |
| CDY10712 | Canola | cytosol, nucleus, plastid | 63.13 | 75.76 |
| CDY02038 | Canola | cytosol | 61.11 | 73.78 |
| CDY32977 | Canola | nucleus, plastid | 62.12 | 67.21 |
| CDY32697 | Canola | nucleus | 59.6 | 66.67 |
| CDY59510 | Canola | nucleus | 60.61 | 66.3 |
| CDY61050 | Canola | nucleus | 61.11 | 66.12 |
| OQU83235 | Sorghum | cytosol | 52.53 | 59.09 |
| CDY35523 | Canola | plastid | 57.58 | 58.46 |
| CDY47983 | Canola | nucleus | 51.52 | 57.95 |
| CDY69731 | Canola | plastid | 57.07 | 57.95 |
| CDY14848 | Canola | nucleus | 51.52 | 57.63 |
| CDY06030 | Canola | nucleus | 52.53 | 57.46 |
| CDX87760 | Canola | nucleus | 52.02 | 57.22 |
| CDY52479 | Canola | nucleus, plastid | 54.04 | 56.32 |
| CDX85083 | Canola | plastid | 56.57 | 56.28 |
| CDY55387 | Canola | nucleus | 50.51 | 56.18 |
| CDX77531 | Canola | plastid | 56.06 | 55.78 |
| CDX86199 | Canola | plastid | 53.54 | 55.21 |
| CDY57024 | Canola | nucleus, plastid | 53.03 | 54.69 |
| CDY64755 | Canola | nucleus, plastid | 53.03 | 54.69 |
| CDY05593 | Canola | nucleus, plastid | 52.53 | 54.45 |
| CDY52505 | Canola | nucleus, plastid | 52.53 | 54.45 |
| CDY63294 | Canola | nucleus | 50.51 | 54.35 |
| CDX74186 | Canola | nucleus, plastid | 52.02 | 54.21 |
| CDY67351 | Canola | nucleus | 52.53 | 53.89 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 50.51 | 53.48 |
| CDY01557 | Canola | nucleus | 51.52 | 53.4 |
| CDX76510 | Canola | nucleus | 52.02 | 53.37 |
| CDX78877 | Canola | nucleus | 52.53 | 53.06 |
| CDY49331 | Canola | nucleus, plastid | 52.53 | 53.06 |
| CDY34056 | Canola | nucleus | 51.52 | 52.85 |
| CDY42932 | Canola | nucleus, plastid | 52.53 | 52.79 |
| CDY30000 | Canola | nucleus, plastid | 50.51 | 52.63 |
| CDY21126 | Canola | nucleus, plastid | 50.51 | 52.63 |
| CDX77619 | Canola | cytosol | 25.76 | 52.04 |
| CDX88480 | Canola | nucleus | 47.47 | 50.81 |
| CDY10790 | Canola | nucleus | 55.05 | 50.7 |
| CDY57088 | Canola | nucleus | 55.05 | 50.23 |
| CDY57087 | Canola | nucleus | 55.05 | 50.23 |
| CDX87432 | Canola | nucleus | 47.98 | 50.0 |
| CDY15426 | Canola | nucleus | 54.55 | 49.77 |
| CDY24755 | Canola | nucleus, plastid | 54.04 | 49.77 |
| CDY14588 | Canola | nucleus | 45.45 | 47.37 |
| CDY26881 | Canola | nucleus | 45.45 | 47.12 |
| TraesCS1B01G235800.1 | Wheat | nucleus | 66.16 | 46.29 |
| TraesCS1A01G222500.1 | Wheat | nucleus | 66.16 | 46.13 |
| TraesCS1D01G224100.1 | Wheat | nucleus | 66.16 | 46.13 |
| Os05t0347400-01 | Rice | nucleus | 65.66 | 45.77 |
| HORVU1Hr1G060250.1 | Barley | nucleus | 65.15 | 45.1 |
| Zm00001d038016_P001 | Maize | extracellular | 62.63 | 41.2 |
| Zm00001d010507_P001 | Maize | nucleus, plastid | 63.13 | 39.56 |
| EES19345 | Sorghum | nucleus, plastid | 64.65 | 39.38 |
Protein Annotations
| EnsemblPlants:CDY06675 | EnsemblPlantsGene:GSBRNA2T00122842001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF6 |
| PFAM:PF04852 | PFscan:PS51697 | ProteinID:CDY06675 | ProteinID:CDY06675.1 | SEG:seg | UniParc:UPI0002A9BA70 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaA10g04540D
Coordinates
chrLK031972:-:205986..206617
Molecular Weight (calculated)
21607.4 Da
IEP (calculated)
9.776
GRAVY (calculated)
-0.801
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTDSGSQQ HGGDPGPSSV TPSSPPATPP SRYESQKRRD WNTFLQYLKN HKPPLALSRC SGAHVIEFLK YLDQFGKTKV HVATCPYFGH QQPPSPCACP
101: LKQAWGSLDA LIGRLRAAYE EHGGRPDSNP FAARAVRIYL REVRESQAKA RGIPYEKKKR KRAPTVTTAR IDVAPSRQSE GGGGCNDSDP SVAEAVPP
101: LKQAWGSLDA LIGRLRAAYE EHGGRPDSNP FAARAVRIYL REVRESQAKA RGIPYEKKKR KRAPTVTTAR IDVAPSRQSE GGGGCNDSDP SVAEAVPP
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.