Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P18300_001 | Banana | nucleus | 75.13 | 71.84 |
| GSMUA_Achr3P10070_001 | Banana | nucleus | 61.42 | 55.76 |
| GSMUA_Achr11P... | Banana | nucleus | 26.4 | 55.32 |
| GSMUA_Achr10P... | Banana | nucleus | 56.85 | 54.9 |
| GSMUA_Achr8P01890_001 | Banana | nucleus | 56.35 | 54.68 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 46.7 | 53.49 |
| GSMUA_Achr11P... | Banana | nucleus | 47.21 | 52.84 |
| GSMUA_Achr11P... | Banana | nucleus | 53.3 | 52.76 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.73 | 51.61 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 45.18 | 51.45 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 44.16 | 50.29 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 44.67 | 50.29 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 43.65 | 50.0 |
| CDY32697 | Canola | nucleus | 44.67 | 49.72 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.58 | 49.35 |
| CDY59510 | Canola | nucleus | 45.18 | 49.17 |
| Bra020365.1-P | Field mustard | nucleus | 45.18 | 49.17 |
| GSMUA_Achr5P07420_001 | Banana | nucleus | 52.28 | 48.58 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 40.1 | 48.17 |
| GSMUA_Achr4P31900_001 | Banana | nucleus | 45.69 | 47.87 |
| AT5G58500.1 | Thale cress | nucleus | 44.16 | 47.8 |
| CDY61050 | Canola | nucleus | 44.16 | 47.54 |
| CDY32977 | Canola | nucleus, plastid | 44.16 | 47.54 |
| VIT_06s0004g07090.t01 | Wine grape | nucleus | 55.33 | 47.19 |
| Bra002642.1-P | Field mustard | nucleus, plastid | 43.65 | 46.99 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 43.15 | 46.45 |
| PGSC0003DMT400078091 | Potato | nucleus | 52.28 | 46.19 |
| Solyc06g082210.1.1 | Tomato | nucleus | 51.78 | 45.95 |
| GSMUA_Achr7P22390_001 | Banana | endoplasmic reticulum, nucleus | 48.22 | 45.89 |
| KRH17088 | Soybean | nucleus | 50.25 | 45.41 |
| GSMUA_Achr9P30540_001 | Banana | nucleus | 42.64 | 45.41 |
| GSMUA_Achr5P00260_001 | Banana | nucleus | 46.19 | 44.61 |
| KRH72732 | Soybean | nucleus | 49.24 | 44.29 |
| GSMUA_AchrUn_... | Banana | nucleus | 46.7 | 44.23 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 36.04 | 44.1 |
| KRG98226 | Soybean | nucleus | 51.78 | 43.97 |
| KRH30185 | Soybean | nucleus | 51.78 | 43.4 |
| GSMUA_Achr11P... | Banana | nucleus | 44.67 | 43.35 |
| GSMUA_Achr11P... | Banana | nucleus | 46.7 | 41.44 |
| Bra002644.1-P | Field mustard | cytosol, nucleus, plastid | 37.56 | 39.57 |
| CDY32978 | Canola | cytosol, nucleus, plastid | 36.55 | 38.5 |
| GSMUA_Achr5P29450_001 | Banana | cytosol, nucleus, plastid | 52.28 | 38.43 |
| GSMUA_Achr9P18050_001 | Banana | nucleus | 55.33 | 38.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P08720_001 | EnsemblPlants:GSMUA_Achr6T08720_001 | EnsemblPlantsGene:GSMUA_Achr6G08720_001 | InterPro:ALOG_dom | InterPro:IPR006936 | PANTHER:PTHR31165 |
| PANTHER:PTHR31165:SF6 | PFAM:PF04852 | PFscan:PS51697 | SEG:seg | UniParc:UPI000295D745 | UniProt:M0T5C1 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G08720_001]
Coordinates
chr6:-:5793775..5794440
Molecular Weight (calculated)
21332.8 Da
IEP (calculated)
10.148
GRAVY (calculated)
-0.892
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPETQSVSG GGGDVPTPPP PCQPQQQQQQ QKPSRYESQK RRDWNAFLQY LANHKPPLTL ARCGGVHVVE FLNYLDQFGK TKAWGSLDAL IGRLRAAYDE
101: NGGGRPESNP FGARAVKAHL REVRESQAKA RGVAYEKKKR KQRLPFTVGE GSSRGAEDNI TSTAPVTVAT KVKPETASAS ASSSTGRDPD PGSWSAS
101: NGGGRPESNP FGARAVKAHL REVRESQAKA RGVAYEKKKR KQRLPFTVGE GSSRGAEDNI TSTAPVTVAT KVKPETASAS ASSSTGRDPD PGSWSAS
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.