Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- nucleus 3
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G28490.1 | KRH03376 | AT5G62920.1 | 18642946 |
| AT5G28490.1 | KRH54462 | AT5G62920.1 | 18642946 |
| AT5G28490.1 | KRH57009 | AT5G62920.1 | 18642946 |
| AT5G28490.1 | KRH63457 | AT5G62920.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG97044 | Soybean | plastid | 93.48 | 93.99 |
| KRH34151 | Soybean | plastid | 71.74 | 75.0 |
| GSMUA_Achr11P... | Banana | nucleus | 38.04 | 74.47 |
| KRG92633 | Soybean | nucleus | 71.2 | 68.95 |
| Zm00001d025863_P001 | Maize | nucleus | 61.96 | 67.86 |
| VIT_14s0036g00540.t01 | Wine grape | plastid | 66.85 | 64.4 |
| KRG92413 | Soybean | nucleus | 65.22 | 62.5 |
| CDY52479 | Canola | nucleus, plastid | 64.13 | 62.11 |
| AT5G28490.1 | Thale cress | nucleus, plastid | 63.59 | 61.58 |
| CDY57024 | Canola | nucleus, plastid | 64.13 | 61.46 |
| CDX86199 | Canola | plastid | 63.59 | 60.94 |
| Bra036134.1-P | Field mustard | nucleus, plastid | 63.59 | 60.94 |
| CDY05593 | Canola | nucleus, plastid | 63.04 | 60.73 |
| CDY52505 | Canola | nucleus, plastid | 63.04 | 60.73 |
| CDY64755 | Canola | nucleus, plastid | 63.04 | 60.42 |
| KRH34391 | Soybean | nucleus | 66.3 | 60.4 |
| CDY63294 | Canola | nucleus | 60.33 | 60.33 |
| Bra020610.1-P | Field mustard | nucleus, plastid | 62.5 | 60.21 |
| Bra009997.1-P | Field mustard | plastid | 62.5 | 59.9 |
| EES11114 | Sorghum | nucleus | 64.13 | 59.3 |
| Zm00001d003057_P001 | Maize | nucleus | 64.13 | 59.0 |
| CDX74186 | Canola | nucleus, plastid | 60.87 | 58.95 |
| Bra001109.1-P | Field mustard | nucleus, plastid | 60.87 | 58.95 |
| Os04t0516200-01 | Rice | nucleus | 64.13 | 58.42 |
| Zm00001d017263_P001 | Maize | nucleus | 64.67 | 58.33 |
| HORVU2Hr1G089190.1 | Barley | nucleus | 63.04 | 58.29 |
| KRH67397 | Soybean | nucleus | 64.13 | 58.13 |
| KRG95674 | Soybean | nucleus | 64.13 | 58.13 |
| KRH42865 | Soybean | plastid | 52.72 | 58.08 |
| Zm00001d051143_P001 | Maize | nucleus | 63.59 | 57.92 |
| Os10t0478000-01 | Rice | nucleus | 64.13 | 57.84 |
| TraesCS2A01G382500.1 | Wheat | nucleus | 63.04 | 57.71 |
| TraesCS2D01G378900.1 | Wheat | nucleus | 63.04 | 57.71 |
| CDY49331 | Canola | nucleus, plastid | 61.41 | 57.65 |
| PGSC0003DMT400029945 | Potato | nucleus | 57.07 | 57.38 |
| CDY42932 | Canola | nucleus, plastid | 61.41 | 57.36 |
| Solyc04g009980.2.1 | Tomato | nucleus, plastid | 55.98 | 57.22 |
| TraesCS2B01G399800.1 | Wheat | nucleus | 62.5 | 57.21 |
| TraesCS6B01G256500.1 | Wheat | nucleus | 61.96 | 57.0 |
| Bra040188.1-P | Field mustard | nucleus, plastid | 60.87 | 56.85 |
| CDY30000 | Canola | nucleus, plastid | 58.7 | 56.84 |
| CDY21126 | Canola | nucleus, plastid | 58.7 | 56.84 |
| TraesCS6A01G225000.1 | Wheat | nucleus | 61.96 | 56.44 |
| TraesCS6D01G209700.1 | Wheat | nucleus | 61.96 | 56.44 |
| KXG30661 | Sorghum | nucleus | 63.59 | 56.25 |
| AT3G04510.1 | Thale cress | nucleus, plastid | 61.41 | 56.22 |
| KRH32192 | Soybean | nucleus | 63.04 | 56.04 |
| Os02t0623400-00 | Rice | nucleus | 63.59 | 55.98 |
| HORVU6Hr1G058340.2 | Barley | nucleus | 61.96 | 55.88 |
| KRH27046 | Soybean | nucleus | 52.72 | 55.43 |
| PGSC0003DMT400060169 | Potato | nucleus, plastid | 62.5 | 55.02 |
| TraesCS1B01G172100.1 | Wheat | nucleus | 61.41 | 54.85 |
| TraesCS1D01G153700.1 | Wheat | nucleus | 61.41 | 54.85 |
| Zm00001d014032_P001 | Maize | nucleus | 62.5 | 54.76 |
| KRH11015 | Soybean | nucleus | 53.8 | 54.7 |
| Solyc05g055020.2.1 | Tomato | nucleus | 62.5 | 54.5 |
| KRH56293 | Soybean | nucleus | 62.5 | 54.5 |
| GSMUA_Achr5P03870_001 | Banana | nucleus | 51.09 | 54.34 |
| KRH21273 | Soybean | nucleus | 53.26 | 54.14 |
| GSMUA_Achr5P18640_001 | Banana | nucleus | 50.54 | 54.07 |
| KRH27347 | Soybean | nucleus | 53.8 | 53.8 |
| Zm00001d032696_P001 | Maize | nucleus | 61.96 | 53.52 |
| KRH25774 | Soybean | nucleus | 51.09 | 53.11 |
| KXG38327 | Sorghum | nucleus | 63.04 | 52.02 |
| KRH55744 | Soybean | nucleus | 50.54 | 51.96 |
| KRH22284 | Soybean | nucleus | 45.11 | 51.88 |
| KRH21973 | Soybean | nucleus | 53.8 | 51.03 |
| GSMUA_Achr4P21940_001 | Banana | nucleus | 48.37 | 50.86 |
| GSMUA_Achr5P14570_001 | Banana | nucleus | 47.28 | 50.29 |
| HORVU1Hr1G041240.5 | Barley | nucleus | 61.41 | 49.78 |
| KRH72732 | Soybean | nucleus | 59.24 | 49.77 |
| KRH17088 | Soybean | nucleus | 58.7 | 49.54 |
| GSMUA_Achr1P09270_001 | Banana | nucleus | 45.65 | 48.84 |
| GSMUA_Achr1P05650_001 | Banana | nucleus | 42.39 | 47.56 |
| KRG98226 | Soybean | nucleus | 59.78 | 47.41 |
| TraesCS1A01G154900.1 | Wheat | nucleus | 61.41 | 46.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 39.13 | 46.75 |
| GSMUA_Achr4P28760_001 | Banana | nucleus | 46.2 | 46.45 |
| Zm00001d051966_P001 | Maize | nucleus | 61.96 | 46.34 |
| Zm00001d018433_P001 | Maize | nucleus | 61.96 | 46.15 |
| KRH30185 | Soybean | nucleus | 58.7 | 45.96 |
| EES05986 | Sorghum | nucleus | 61.96 | 45.42 |
| Os02t0811000-01 | Rice | nucleus | 60.33 | 44.76 |
| GSMUA_Achr6P36540_001 | Banana | nucleus | 39.13 | 44.72 |
| TraesCS6A01G377300.1 | Wheat | nucleus | 60.33 | 44.05 |
| TraesCS6B01G414700.1 | Wheat | nucleus | 60.33 | 44.05 |
| TraesCS6D01G361900.1 | Wheat | nucleus | 60.33 | 44.05 |
| HORVU6Hr1G088790.1 | Barley | nucleus | 60.33 | 43.36 |
| KRH58368 | Soybean | nucleus | 55.43 | 43.22 |
| KRH42251 | Soybean | plastid | 55.98 | 41.7 |
| Bra040137.1-P | Field mustard | nucleus, plastid | 58.7 | 36.36 |
Protein Annotations
| EntrezGene:100803965 | MapMan:35.1 | EMBL:ACUP02002125 | InterPro:ALOG_dom | EnsemblPlantsGene:GLYMA_03G250900 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009987 | UniProt:I1JRS6 |
| InterPro:IPR006936 | EnsemblPlants:KRH68792 | ProteinID:KRH68792 | ProteinID:KRH68792.1 | PFAM:PF04852 | PFscan:PS51697 |
| PANTHER:PTHR31165 | PANTHER:PTHR31165:SF16 | UniParc:UPI00023378AF | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr3:+:44660576..44661797
Molecular Weight (calculated)
20240.8 Da
IEP (calculated)
10.067
GRAVY (calculated)
-0.670
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MESVASPIVT CSSNNNGSGS NNSTTTTPSR YENQKRRDWN TFCQYLRNQR PPLSMAVCGG AHVLEFLQYL DQFGKTKVHN PTCPFFGLPN PPAPCPCPLR
101: QAWGSLDALI GRLRAAYEEN GGRAETNPFG ARAVRFYLHD VRDFQAKARG VSYEKKRKRP KQQNIANAAA TSVTTSPNAT ATAT
101: QAWGSLDALI GRLRAAYEEN GGRAETNPFG ARAVRFYLHD VRDFQAKARG VSYEKKRKRP KQQNIANAAA TSVTTSPNAT ATAT
001: MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
101: KQAWGSLDAL IGRLRAAYEE NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG DPCNVGAPSV AEAVPP
Arabidopsis Description
LSH6LSH6 [Source:UniProtKB/TrEMBL;Acc:A0A178WE41]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.