Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 2
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_07s0005g03530.t01 | Wine grape | nucleus | 52.82 | 71.58 |
VIT_05s0049g01170.t01 | Wine grape | nucleus | 53.63 | 66.17 |
VIT_12s0028g02160.t01 | Wine grape | nucleus | 42.74 | 63.47 |
VIT_14s0036g00540.t01 | Wine grape | plastid | 48.79 | 63.35 |
VIT_10s0003g01280.t01 | Wine grape | nucleus | 43.95 | 62.29 |
VIT_06s0004g07090.t01 | Wine grape | nucleus | 50.81 | 54.55 |
VIT_19s0014g01350.t01 | Wine grape | nucleus | 42.74 | 48.18 |
Protein Annotations
EntrezGene:100249172 | wikigene:100249172 | MapMan:35.1 | InterPro:ALOG_dom | ProteinID:CCB55892 | ProteinID:CCB55892.1 |
UniProt:F6HM17 | EMBL:FN595992 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009299 | GO:GO:0009416 |
GO:GO:0009628 | GO:GO:0009987 | InterPro:IPR006936 | EntrezGene:LOC100249172 | wikigene:LOC100249172 | PFAM:PF04852 |
PFscan:PS51697 | PANTHER:PTHR31165 | PANTHER:PTHR31165:SF36 | TIGR:TC57278 | UniParc:UPI000210A444 | ArrayExpress:VIT_10s0003g05690 |
EnsemblPlantsGene:VIT_10s0003g05690 | EnsemblPlants:VIT_10s0003g05690.t01 | RefSeq:XP_002271024 | RefSeq:XP_002271024.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr10:+:10576859..10577918
Molecular Weight (calculated)
27396.3 Da
IEP (calculated)
10.316
GRAVY (calculated)
-0.594
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAVAAAAA AANSGSRCNS ANSSSSGNEN SLLSRQIAVT QPLQPPSRYE SQKRRDWNTF GQYLRNHRPP LALNRCSGAN VLEFLRYLDQ FGKTKVHTQM
101: CPFFGHPHPP APCPCPLRQA WGSLDALIGR LRAAFEENGG PPETNPFGAR AVRLYLREVR DAQAKARGIA YEKKKRKRPQ QHQESSSSTD LNSTQPNGGL
201: VMVDSSDHGR PSMIPLSPLF WLFNQATFSY FPSLKPLDES ILSRVWSG
101: CPFFGHPHPP APCPCPLRQA WGSLDALIGR LRAAFEENGG PPETNPFGAR AVRLYLREVR DAQAKARGIA YEKKKRKRPQ QHQESSSSTD LNSTQPNGGL
201: VMVDSSDHGR PSMIPLSPLF WLFNQATFSY FPSLKPLDES ILSRVWSG
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.