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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_07s0005g03530.t01 Wine grape nucleus 52.82 71.58
VIT_05s0049g01170.t01 Wine grape nucleus 53.63 66.17
VIT_12s0028g02160.t01 Wine grape nucleus 42.74 63.47
VIT_14s0036g00540.t01 Wine grape plastid 48.79 63.35
VIT_10s0003g01280.t01 Wine grape nucleus 43.95 62.29
VIT_06s0004g07090.t01 Wine grape nucleus 50.81 54.55
VIT_19s0014g01350.t01 Wine grape nucleus 42.74 48.18
Protein Annotations
EntrezGene:100249172wikigene:100249172MapMan:35.1InterPro:ALOG_domProteinID:CCB55892ProteinID:CCB55892.1
UniProt:F6HM17EMBL:FN595992GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009299GO:GO:0009416
GO:GO:0009628GO:GO:0009987InterPro:IPR006936EntrezGene:LOC100249172wikigene:LOC100249172PFAM:PF04852
PFscan:PS51697PANTHER:PTHR31165PANTHER:PTHR31165:SF36TIGR:TC57278UniParc:UPI000210A444ArrayExpress:VIT_10s0003g05690
EnsemblPlantsGene:VIT_10s0003g05690EnsemblPlants:VIT_10s0003g05690.t01RefSeq:XP_002271024RefSeq:XP_002271024.1SEG:seg:
Description
No Description!
Coordinates
chr10:+:10576859..10577918
Molecular Weight (calculated)
27396.3 Da
IEP (calculated)
10.316
GRAVY (calculated)
-0.594
Length
248 amino acids
Sequence
(BLAST)
001: MSAAVAAAAA AANSGSRCNS ANSSSSGNEN SLLSRQIAVT QPLQPPSRYE SQKRRDWNTF GQYLRNHRPP LALNRCSGAN VLEFLRYLDQ FGKTKVHTQM
101: CPFFGHPHPP APCPCPLRQA WGSLDALIGR LRAAFEENGG PPETNPFGAR AVRLYLREVR DAQAKARGIA YEKKKRKRPQ QHQESSSSTD LNSTQPNGGL
201: VMVDSSDHGR PSMIPLSPLF WLFNQATFSY FPSLKPLDES ILSRVWSG
Best Arabidopsis Sequence Match ( AT2G31160.1 )
(BLAST)
001: MDMIPQLMEG SSAYGGVTNL NIISNNSSSV TGATGGEATQ PLSSSSSPSA NSSRYENQKR RDWNTFGQYL RNHRPPLSLS RCSGAHVLEF LRYLDQFGKT
101: KVHTNICHFY GHPNPPAPCP CPLRQAWGSL DALIGRLRAA FEENGGKPET NPFGARAVRL YLREVRDMQS KARGVSYEKK KRKRPLPSSS TSSSSAVASH
201: QQFQMLPGTS STTQLKFEK
Arabidopsis Description
LSH3Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Source:UniProtKB/Swiss-Prot;Acc:O82268]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.