Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G29910.1 | Thale cress | plastid | 99.63 | 99.63 |
| AT1G29920.1 | Thale cress | plastid | 99.63 | 99.63 |
| AT2G34420.1 | Thale cress | plastid | 97.38 | 98.11 |
| Bra021909.1-P | Field mustard | cytosol, extracellular, plastid | 58.8 | 97.52 |
| Bra030182.1-P | Field mustard | plastid | 97.38 | 97.38 |
| CDY35271 | Canola | plastid | 97.38 | 97.38 |
| CDY43198 | Canola | plastid | 97.38 | 97.38 |
| CDX90218 | Canola | plastid | 97.38 | 97.38 |
| CDY66768 | Canola | plastid | 97.0 | 97.0 |
| CDY43676 | Canola | plastid | 97.0 | 97.0 |
| CDY26306 | Canola | plastid | 97.0 | 97.0 |
| CDX98158 | Canola | plastid | 96.25 | 96.25 |
| CDX84647 | Canola | plastid | 95.88 | 96.24 |
| Bra010807.1-P | Field mustard | plastid | 95.88 | 95.88 |
| CDX99866 | Canola | plastid | 95.88 | 95.88 |
| AT2G34430.1 | Thale cress | plastid | 95.51 | 95.86 |
| Bra022976.1-P | Field mustard | plastid | 95.51 | 95.86 |
| CDX79562 | Canola | plastid | 95.51 | 95.86 |
| CDY30369 | Canola | plastid | 54.31 | 95.39 |
| Bra030181.1-P | Field mustard | plastid | 95.13 | 95.13 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, plastid | 46.82 | 93.98 |
| AT2G05070.1 | Thale cress | plastid | 76.03 | 76.6 |
| AT5G54270.1 | Thale cress | plastid | 68.16 | 68.68 |
| AT3G27690.2 | Thale cress | golgi, plastid | 75.66 | 67.79 |
| AT2G05100.2 | Thale cress | plastid | 68.54 | 57.73 |
| AT4G10340.1 | Thale cress | plastid | 42.32 | 40.36 |
| AT3G54890.1 | Thale cress | plastid | 34.83 | 38.59 |
| AT3G47470.1 | Thale cress | plastid | 32.58 | 34.66 |
| AT3G61470.1 | Thale cress | plastid | 33.33 | 34.63 |
| AT3G08940.2 | Thale cress | plastid | 35.96 | 33.45 |
| AT1G76570.1 | Thale cress | plastid | 40.82 | 33.33 |
| AT5G01530.1 | Thale cress | plastid | 35.96 | 33.1 |
| AT1G19150.1 | Thale cress | plastid | 33.33 | 32.96 |
| AT1G61520.1 | Thale cress | plastid | 33.33 | 32.6 |
| AT1G45474.2 | Thale cress | mitochondrion | 29.96 | 31.25 |
| AT5G28450.1 | Thale cress | plastid | 20.22 | 31.21 |
| AT1G15820.1 | Thale cress | plastid | 29.21 | 30.23 |
| AT2G40100.1 | Thale cress | plastid | 30.34 | 29.35 |
Protein Annotations
| MapMan:1.1.1.1.1 | Gene3D:1.10.3460.10 | PDB:5MDX | EntrezGene:839871 | UniProt:A0A178WKX1 | ProteinID:AAG10603.1 |
| ProteinID:AEE31151.1 | EMBL:AF428359 | ArrayExpress:AT1G29930 | EnsemblPlantsGene:AT1G29930 | RefSeq:AT1G29930 | TAIR:AT1G29930 |
| RefSeq:AT1G29930-TAIR-G | EnsemblPlants:AT1G29930.1 | TAIR:AT1G29930.1 | EMBL:AY045673 | EMBL:AY050935 | EMBL:AY058180 |
| EMBL:AY091169 | ProteinID:CAA27543.1 | ProteinID:CAA33290.1 | ProteinID:CAA33291.1 | Symbol:CAB1 | InterPro:Chloro_AB-bd_pln |
| InterPro:Chloroa_b-bind | InterPro:Chlorophyll_a/b-bd_dom_sf | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006091 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009416 | GO:GO:0009507 | GO:GO:0009522 | GO:GO:0009523 | GO:GO:0009534 |
| GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009765 | GO:GO:0009768 |
| GO:GO:0009941 | GO:GO:0009987 | GO:GO:0010287 | GO:GO:0015979 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016168 | GO:GO:0018298 | GO:GO:0019538 | GO:GO:0019904 | GO:GO:0031409 | GO:GO:0046872 |
| InterPro:IPR023329 | RefSeq:NP_174286.1 | ProteinID:OAP18794.1 | UniProt:P04778 | PFAM:PF00504 | PO:PO:0000005 |
| PO:PO:0000293 | PO:PO:0006339 | PANTHER:PTHR21649 | PANTHER:PTHR21649:SF55 | SUPFAM:SSF103511 | UniParc:UPI0000000BA8 |
| EMBL:Z17799 | : | : | : | : | : |
Description
LHCB1.3Chlorophyll a-b binding protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P04778]
Coordinates
chr1:+:10477885..10479114
Molecular Weight (calculated)
28242.7 Da
IEP (calculated)
5.348
GRAVY (calculated)
0.021
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.