Factsheet for AT2G05070.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15050	Canola	plastid	97.74	97.74
CDX93077	Canola	plastid	97.36	97.36
Bra013183.1-P	Field mustard	plastid	97.36	97.36
VIT_12s0057g00630.t01	Wine grape	plastid	89.43	89.43
KRH74003	Soybean	nucleus, plastid	88.3	88.3
PGSC0003DMT400010985	Potato	plastid	87.92	87.92
Solyc12g006140.1.1	Tomato	plastid	87.92	87.92
KRH14122	Soybean	nucleus, plastid	87.17	87.17
GSMUA_Achr4P33040_001	Banana	plastid, unclear	86.42	86.74
PGSC0003DMT400015740	Potato	plastid	86.04	86.04
Solyc07g047850.2.1	Tomato	plastid	86.04	86.04
Os03t0592500-01	Rice	extracellular	85.28	85.93
Zm00001d033136_P001	Maize	plastid	83.4	85.0
Zm00001d033132_P001	Maize	plastid	83.4	85.0
AT3G27690.2	Thale cress	golgi, plastid	95.09	84.56
TraesCS5A01G322500.1	Wheat	plastid	83.77	84.41
TraesCS5B01G322900.1	Wheat	plastid	83.77	84.41
TraesCS5D01G329200.1	Wheat	plastid	83.77	84.41
EER93861	Sorghum	plastid	83.4	84.35
AT1G29930.1	Thale cress	plastid	76.6	76.03
AT1G29920.1	Thale cress	plastid	76.6	76.03
AT1G29910.1	Thale cress	plastid	76.6	76.03
AT2G34420.1	Thale cress	plastid	75.85	75.85
AT2G05100.2	Thale cress	plastid	89.81	75.08
AT2G34430.1	Thale cress	plastid	74.34	74.06
Zm00001d013766_P001	Maize	plastid	38.87	71.53
AT5G54270.1	Thale cress	plastid	67.17	67.17
HORVU5Hr1G082420.1	Barley	plastid	83.4	64.43
AT4G10340.1	Thale cress	plastid	41.13	38.93
AT3G54890.1	Thale cress	plastid	32.45	35.68
AT3G47470.1	Thale cress	plastid	31.32	33.07
AT1G76570.1	Thale cress	plastid	40.75	33.03
AT3G61470.1	Thale cress	plastid	31.7	32.68
AT1G19150.1	Thale cress	plastid	32.45	31.85
AT1G61520.1	Thale cress	plastid	32.45	31.5
AT1G45474.2	Thale cress	mitochondrion	30.19	31.25
AT5G28450.1	Thale cress	plastid	20.38	31.21
AT5G01530.1	Thale cress	plastid	33.21	30.34
AT3G08940.2	Thale cress	plastid	32.83	30.31
AT2G40100.1	Thale cress	plastid	29.06	27.9
AT1G15820.1	Thale cress	plastid	26.04	26.74

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	EntrezGene:815055	ProteinID:AAD25595.1	ProteinID:AEC05893.1	EMBL:AF134123
ArrayExpress:AT2G05070	EnsemblPlantsGene:AT2G05070	RefSeq:AT2G05070	TAIR:AT2G05070	RefSeq:AT2G05070-TAIR-G	EnsemblPlants:AT2G05070.1
TAIR:AT2G05070.1	EMBL:AY054218	EMBL:AY062563	EMBL:AY066036	EMBL:AY093372	Unigene:At.63397
InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006091
GO:GO:0006464	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009269
GO:GO:0009409	GO:GO:0009416	GO:GO:0009507	GO:GO:0009517	GO:GO:0009522	GO:GO:0009523
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009644
GO:GO:0009645	GO:GO:0009719	GO:GO:0009765	GO:GO:0009768	GO:GO:0009769	GO:GO:0009941
GO:GO:0009987	GO:GO:0010114	GO:GO:0010218	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0030104	GO:GO:0031409
GO:GO:0046872	GO:GO:0071215	GO:GO:0090333	GO:GO:1903428	InterPro:IPR023329	Symbol:LHCB2.2
RefSeq:NP_178582.1	PFAM:PF00504	PO:PO:0000005	PO:PO:0000293	PO:PO:0006339	PO:PO:0009025
PANTHER:PTHR21649	PANTHER:PTHR21649:SF33	UniProt:Q9S7J7	SUPFAM:SSF103511	UniParc:UPI00000AABBE	SEG:seg

Description

LHCB2.2Chlorophyll a-b binding protein 2.2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9S7J7]

Coordinates

chr2:-:1799234..1800472

Molecular Weight (calculated)

28622.1 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.085

Length

265 amino acids

Sequence
(BLAST)

001: MATSAIQQSS FAGQTALKPS SDLIQKVGVL GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.