Factsheet for Solyc07g047850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 26371478
plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015740	Potato	plastid	98.87	98.87
Solyc12g006140.1.1	Tomato	plastid	94.34	94.34
VIT_12s0057g00630.t01	Wine grape	plastid	91.7	91.7
KRH74003	Soybean	nucleus, plastid	88.68	88.68
KRH14122	Soybean	nucleus, plastid	88.68	88.68
GSMUA_Achr4P33040_001	Banana	plastid, unclear	88.3	88.64
Os03t0592500-01	Rice	extracellular	87.92	88.59
Zm00001d033136_P001	Maize	plastid	85.66	87.31
Zm00001d033132_P001	Maize	plastid	85.66	87.31
CDY15050	Canola	plastid	87.17	87.17
EER93861	Sorghum	plastid	86.04	87.02
CDX93077	Canola	plastid	86.79	86.79
Bra013183.1-P	Field mustard	plastid	86.79	86.79
AT2G05070.1	Thale cress	plastid	86.04	86.04
CDY00149	Canola	plastid	85.66	85.34
Bra025297.1-P	Field mustard	plastid	85.66	85.34
CDY49770	Canola	plastid	85.66	85.34
CDY13732	Canola	plastid	85.66	85.34
Bra039070.1-P	Field mustard	plastid	85.28	85.28
CDY20039	Canola	plastid	85.28	85.28
CDY03989	Canola	plastid	85.28	84.96
TraesCS5D01G329200.1	Wheat	plastid	84.15	84.79
TraesCS5B01G322900.1	Wheat	plastid	84.15	84.79
TraesCS5A01G322500.1	Wheat	plastid	84.15	84.79
CDX83726	Canola	plastid	84.91	84.59
Bra033022.1-P	Field mustard	plastid	80.38	82.56
Solyc08g067320.1.1	Tomato	plastid	28.3	82.42
Solyc02g070990.1.1	Tomato	plastid	79.25	79.25
Solyc02g070970.1.1	Tomato	plastid	79.25	79.25
Solyc02g071010.1.1	Tomato	plastid	79.25	79.25
Solyc02g071030.1.1	Tomato	plastid	79.25	79.25
Solyc02g070950.1.1	Tomato	plastid	79.25	79.25
Solyc02g070940.1.1	Tomato	plastid	79.25	79.25
Solyc02g070980.1.1	Tomato	nucleus, plastid	78.87	78.87
Solyc02g071000.1.1	Tomato	nucleus, plastid	78.49	78.49
Solyc03g005780.1.1	Tomato	plastid	78.87	78.28
Solyc03g005770.1.1	Tomato	nucleus	78.87	78.28
Solyc03g005760.1.1	Tomato	nucleus	78.49	77.9
AT3G27690.2	Thale cress	golgi, plastid	86.79	77.18
Zm00001d013766_P001	Maize	plastid	39.25	72.22
Solyc12g011450.1.1	Tomato	plastid	69.81	69.81
Solyc07g063600.2.1	Tomato	nucleus	68.68	69.47
Solyc08g067330.1.1	Tomato	plastid	25.28	68.37
AT2G05100.2	Thale cress	plastid	79.62	66.56
HORVU5Hr1G082420.1	Barley	plastid	84.91	65.6
Solyc06g063370.2.1	Tomato	plastid	42.64	39.51
Solyc05g056050.2.1	Tomato	plastid	33.58	36.18
Solyc05g056070.2.1	Tomato	plastid	33.21	35.77
Solyc12g009200.1.1	Tomato	nucleus, plastid	32.08	32.69
Solyc10g007690.2.1	Tomato	plastid	32.83	31.87
Solyc09g014520.2.1	Tomato	plastid	33.96	31.58
Solyc12g011280.1.1	Tomato	plastid	32.45	31.5
Solyc10g006230.2.1	Tomato	plastid	32.08	31.48
Solyc06g069730.2.1	Tomato	plastid	29.06	30.8
Solyc03g115900.2.1	Tomato	plastid	28.3	29.88
Solyc04g082920.2.1	Tomato	plastid	22.64	27.52
Solyc07g022900.2.1	Tomato	plastid	26.79	27.1
Solyc01g105050.2.1	Tomato	plastid	25.66	26.56
Solyc01g105030.2.1	Tomato	plastid	25.66	26.56

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0046872
InterPro:IPR023329	EMBL:M17558	UniProt:P14278	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF33
SUPFAM:SSF103511	EnsemblPlantsGene:Solyc07g047850.2	EnsemblPlants:Solyc07g047850.2.1	UniParc:UPI0000127132	:	:

Description

CAB4Chlorophyll a-b binding protein 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P14278]

Coordinates

chr7:-:59080945..59082333

Molecular Weight (calculated)

28776.3 Da

IEP (calculated)

5.123

GRAVY (calculated)

-0.086

Length

265 amino acids

Sequence
(BLAST)

001: MATCAIQQSA FVGQAVGKSQ NEFIRKVGNF GEGRITMRRT VKSAPQSIWY GEDRPKYLGP FSEQTPSYLT GEFPGDYGWD TAGLSADPET FARNRELEVI
101: HCRWAMLGAL GCVFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LVHAQSILAI WACQVVLMGF VEGYRVGGGP LGEGLDKIYP GGAFDPLGLA
201: DDPEAFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPIE NLSDHINDPV ANNAWAYATN FVPGK

Best Arabidopsis Sequence Match ( AT2G05100.1 )
(BLAST)

001: MATSAIQQSS FAGQTALKPS NELLRKVGVS GGGRVTMRRT VKSTPQSIWY GPDRPKYLGP FSENTPSYLT GEYPGDYGWD TAGLSADPET FAKNRELEVI
101: HSRWAMLGAL GCTFPEILSK NGVKFGEAVW FKAGSQIFSE GGLDYLGNPN LIHAQSILAI WAVQVVLMGF IEGYRIGGGP LGEGLDPLYP GGAFDPLNLA
201: EDPEAFSELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIE NLFDHLADPV ANNAWSYATN FVPGN

Arabidopsis Description

LHCB2.1photosystem II light harvesting complex gene 2.1 [Source:TAIR;Acc:AT2G05100]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.