Factsheet for Solyc03g005760.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g005770.1.1	Tomato	nucleus	99.25	99.25
Solyc08g067320.1.1	Tomato	plastid	33.33	97.8
Solyc03g005780.1.1	Tomato	plastid	96.63	96.63
PGSC0003DMT400034897	Potato	plastid	94.76	96.56
Solyc02g070940.1.1	Tomato	plastid	94.01	94.72
Solyc02g070950.1.1	Tomato	plastid	94.01	94.72
Solyc02g070970.1.1	Tomato	plastid	94.01	94.72
Solyc02g071030.1.1	Tomato	plastid	94.01	94.72
Solyc02g070990.1.1	Tomato	plastid	94.01	94.72
Solyc02g071010.1.1	Tomato	plastid	94.01	94.72
PGSC0003DMT400021389	Potato	plastid	93.63	94.34
PGSC0003DMT400021390	Potato	plastid	91.76	94.23
Solyc02g070980.1.1	Tomato	nucleus, plastid	93.26	93.96
PGSC0003DMT400092927	Potato	plastid	93.26	93.96
Solyc02g071000.1.1	Tomato	nucleus, plastid	92.88	93.58
Solyc08g067330.1.1	Tomato	plastid	30.34	82.65
PGSC0003DMT400022698	Potato	plastid	93.63	81.97
Solyc07g047850.2.1	Tomato	plastid	77.9	78.49
Solyc12g006140.1.1	Tomato	plastid	77.53	78.11
Solyc07g063600.2.1	Tomato	nucleus	68.91	70.23
Solyc12g011450.1.1	Tomato	plastid	69.29	69.81
Solyc06g063370.2.1	Tomato	plastid	47.19	44.06
Solyc05g056050.2.1	Tomato	plastid	35.58	38.62
Solyc05g056070.2.1	Tomato	plastid	35.21	38.21
Solyc12g009200.1.1	Tomato	nucleus, plastid	34.83	35.77
Solyc06g069730.2.1	Tomato	plastid	32.21	34.4
Solyc10g006230.2.1	Tomato	plastid	34.08	33.7
Solyc10g007690.2.1	Tomato	plastid	34.46	33.7
Solyc12g011280.1.1	Tomato	plastid	34.46	33.7
Solyc03g115900.2.1	Tomato	plastid	31.09	33.07
Solyc09g014520.2.1	Tomato	plastid	34.83	32.63
Solyc04g082920.2.1	Tomato	plastid	24.34	29.82
Solyc07g022900.2.1	Tomato	plastid	28.46	29.01
Solyc01g105030.2.1	Tomato	plastid	27.72	28.91
Solyc01g105050.2.1	Tomato	plastid	27.34	28.52

Protein Annotations

MapMan:1.1.1.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	GO:GO:0046872
InterPro:IPR023329	UniProt:K4BE00	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF56	SUPFAM:SSF103511
EnsemblPlantsGene:Solyc03g005760.1	EnsemblPlants:Solyc03g005760.1.1	UniParc:UPI0002767606	SEG:seg	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4BE00]

Coordinates

chr3:-:538196..538999

Molecular Weight (calculated)

28320.8 Da

IEP (calculated)

5.353

GRAVY (calculated)

0.013

Length

267 amino acids

Sequence
(BLAST)

001: MAASTMALSS STFAGKTVKL APSSSEISGN GRITMRKTAA KPKPASSGSP WYGPDRVKYL GPFSGESPSY LTGEFPGDYG WDTAGLSADP ETFAKNRELE
101: VIHCRWAMLG ALGCVFPELL ARNGVKFGEA VWFKAGSQIF SEGGLDYLGN PSLVHAQSIL AIWACQVVLM GAVEGYRIAG GPLGEVVDPL YPGGSFDPLG
201: LAEDPEAFAE LKVKEIKNGR LAMFSMFGFF VQAIVTGKGP LENLADHIAD PVNNNAWAFA TNFVPGK

Best Arabidopsis Sequence Match ( AT1G29910.1 )
(BLAST)

001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK

Arabidopsis Description

LHCB1.1Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.