Factsheet for Solyc05g056050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 15248779
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 15248779 doi

S Storf, EJ Stauber, M Hippler, VH Schmid

Institut für Allgemeine Botanik, Johannes Gutenberg-Universität Mainz, Müllerweg 6, 55099 Mainz, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400059995	Potato	plastid	96.34	96.34
Solyc05g056070.2.1	Tomato	plastid	93.5	93.5
Bra003198.1-P	Field mustard	plastid	83.33	85.06
GSMUA_Achr6P31940_001	Banana	plastid	83.33	85.06
CDY07517	Canola	plastid	83.33	85.06
CDX67613	Canola	plastid	83.33	85.06
KRH08384	Soybean	nucleus, plastid	84.96	84.96
KRH70044	Soybean	mitochondrion, nucleus, plastid	84.96	84.96
CDX73435	Canola	plastid	82.93	84.65
AT3G54890.1	Thale cress	plastid	82.93	84.65
CDX78277	Canola	plastid	82.93	84.65
Bra007109.1-P	Field mustard	plastid	82.93	84.65
VIT_13s0019g04140.t01	Wine grape	plastid	83.74	84.43
GSMUA_Achr2P06350_001	Banana	unclear	80.89	82.57
Os06t0320500-01	Rice	plastid	74.39	75.93
Zm00001d015385_P001	Maize	plastid	75.2	75.51
EES04597	Sorghum	plastid	75.2	75.51
TraesCS7D01G227300.1	Wheat	plastid	73.58	73.88
TraesCS7B01G192500.1	Wheat	plastid	73.58	73.88
TraesCS7A01G227100.1	Wheat	plastid	73.58	73.28
HORVU7Hr1G046320.2	Barley	plastid	72.76	62.81
Zm00001d024372_P001	Maize	plastid	46.75	48.52
Solyc08g067320.1.1	Tomato	plastid	17.07	46.15
Solyc03g115900.2.1	Tomato	plastid	38.21	37.45
Solyc03g005780.1.1	Tomato	plastid	39.02	35.96
Solyc10g006230.2.1	Tomato	plastid	39.43	35.93
Solyc02g070990.1.1	Tomato	plastid	38.62	35.85
Solyc12g009200.1.1	Tomato	nucleus, plastid	37.8	35.77
Solyc06g069730.2.1	Tomato	plastid	36.18	35.6
Solyc03g005760.1.1	Tomato	nucleus	38.62	35.58
Solyc03g005770.1.1	Tomato	nucleus	38.62	35.58
Solyc02g071010.1.1	Tomato	plastid	38.21	35.47
Solyc02g070940.1.1	Tomato	plastid	38.21	35.47
Solyc02g070950.1.1	Tomato	plastid	38.21	35.47
Solyc02g070970.1.1	Tomato	plastid	38.21	35.47
Solyc02g070980.1.1	Tomato	nucleus, plastid	38.21	35.47
Solyc02g071030.1.1	Tomato	plastid	38.21	35.47
Solyc02g071000.1.1	Tomato	nucleus, plastid	38.21	35.47
Solyc09g014520.2.1	Tomato	plastid	39.84	34.39
Solyc07g063600.2.1	Tomato	nucleus	35.77	33.59
Solyc07g047850.2.1	Tomato	plastid	36.18	33.58
Solyc12g006140.1.1	Tomato	plastid	35.77	33.21
Solyc12g011450.1.1	Tomato	plastid	35.37	32.83
Solyc10g007690.2.1	Tomato	plastid	35.77	32.23
Solyc01g105050.2.1	Tomato	plastid	32.52	31.25
Solyc12g011280.1.1	Tomato	plastid	34.55	31.14
Solyc07g022900.2.1	Tomato	plastid	32.52	30.53
Solyc01g105030.2.1	Tomato	plastid	31.71	30.47
Solyc06g063370.2.1	Tomato	plastid	34.55	29.72
Solyc08g067330.1.1	Tomato	plastid	10.98	27.55
Solyc04g082920.2.1	Tomato	plastid	17.48	19.72

Protein Annotations

MapMan:1.1.4.1.1	Gene3D:1.10.3460.10	InterPro:Chloro_AB-bd_pln	InterPro:Chloroa_b-bind	InterPro:Chlorophyll_a/b-bd_dom_sf	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006091
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009416	GO:GO:0009507	GO:GO:0009522
GO:GO:0009523	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009628	GO:GO:0009765
GO:GO:0009768	GO:GO:0009941	GO:GO:0009987	GO:GO:0010287	GO:GO:0015979	GO:GO:0016020
GO:GO:0016021	GO:GO:0016168	GO:GO:0018298	GO:GO:0019538	GO:GO:0031409	InterPro:IPR023329
UniProt:K4C2T0	PFAM:PF00504	PANTHER:PTHR21649	PANTHER:PTHR21649:SF7	SUPFAM:SSF103511	EnsemblPlantsGene:Solyc05g056050.2
EnsemblPlants:Solyc05g056050.2.1	UniParc:UPI0002767453	SEG:seg	:	:	:

Description

Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:K4C2T0]

Coordinates

chr5:-:65451189..65453358

Molecular Weight (calculated)

26715.0 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.139

Length

246 amino acids

Sequence
(BLAST)

001: MASNTLMSYG IAPVYPSILS SSKSKFATAL PVSTGVTNDT SRFSMSANWM PGQPRPSYLD GSDPGDFGFD PLGFGEVPEN LERYKESELI HCRWAMLAVP
101: GIIVPEALGL GNWVKAQEWA AIPGGQATYL GQPVPWGTLP TILAIEFLAI AFVEHQRSME KDSEKKKYPG GAFDPLGYSK DPAKFEELKV KEIKNGRLAL
201: LAFVGFCVQQ SAYPGTGPLE NLATHLADPW HNNIGDVIIP KGIFPN

Best Arabidopsis Sequence Match ( AT3G54890.1 )
(BLAST)

001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N

Arabidopsis Description

LHCA1Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A178VBT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.